Arun Siddharth Konagurthu

30 papers A* 1B 4C 1Journal 22Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles.
Bioinform.
Piyumi R. Amarasinghe, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arthur M. Lesk, Arun Siddharth Konagurthu
2023 J jnl
The divergence time of protein structures modelled by Markov matrices and its relation to the divergence of sequences.
CoRR
Sandun Rajapaksa, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arun Siddharth Konagurthu
2022 J jnl
Bridging the gaps in statistical models of protein alignment.
Bioinform.
Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu
2022 J jnl
On the reliability and the limits of inference of amino acid sequence alignments.
Bioinform.
Sandun Rajapaksa, Dinithi Sumanaweera, Arthur M. Lesk, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, David Abramson, Arun Siddharth Konagurthu
2021 J jnl
Neighbourhoods in the yeast regulatory network in different physiological states.
Bioinform.
Arthur M. Lesk, Arun Siddharth Konagurthu
2021 B conf
On Universal Codes for Integers: Wallace Tree, Elias Omega and Beyond.
DCC
Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt
2021 — conf
On identifying statistical redundancy at the level of amino acid subsequences.
BIBM
Sandun Rajapaksa, Dinithi Sumanaweera, Maria Garcia de la Banda, Peter J. Stuckey, David Abramson, Lloyd Allison, Arthur M. Lesk, Arun Siddharth Konagurthu
2020 J jnl
Bridging the Gaps in Statistical Models of Protein Alignment.
CoRR
Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu
2019 J jnl
On Universal Codes for Integers: Wallace Tree, Elias Omega and Variations.
CoRR
Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt
2019 J jnl
Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors.
Bioinform.
Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu
2018 B conf
The Bits Between Proteins.
DCC
Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu
2017 B conf
Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes.
DCC
Ramanan Subramanian, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, David Abramson, Arthur M. Lesk, Arun Siddharth Konagurthu
2017 J jnl
Statistical inference of protein structural alignments using information and compression.
Bioinform.
James H. Collier, Lloyd Allison, Arthur M. Lesk, Peter J. Stuckey, Maria Garcia de la Banda, Arun Siddharth Konagurthu
2015 J jnl
On Sufficient Statistics of Least-Squares Superposition of Vector Sets.
J. Comput. Biol.
Arun Siddharth Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk
2014 J jnl
A new statistical framework to assess structural alignment quality using information compression.
Bioinform.
James H. Collier, Lloyd Allison, Arthur M. Lesk, Maria Garcia de la Banda, Arun Siddharth Konagurthu
2014 — conf
An Information Measure for Comparing Top k Lists.
eScience
James H. Collier, Arun Siddharth Konagurthu
2014 J jnl
On Representing Protein Folding Patterns Using Non-Linear Parametric Curves.
IEEE ACM Trans. Comput. Biol. Bioinform.
Parthan Kasarapu, Maria Garcia de la Banda, Arun Siddharth Konagurthu
2014 B conf
On Sufficient Statistics of Least-Squares Superposition of Vector Sets.
RECOMB
Arun Siddharth Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk
2013 J jnl
An information measure for comparing top $k$ lists.
CoRR
Arun Siddharth Konagurthu, James H. Collier
2013 A* conf
Statistical Inference of Protein "LEGO Bricks".
ICDM
Arun Siddharth Konagurthu, Lloyd Allison, David Abramson, Peter J. Stuckey, Arthur M. Lesk
2012 J jnl
Minimum message length inference of secondary structure from protein coordinate data.
Bioinform.
Arun Siddharth Konagurthu, Arthur M. Lesk, Lloyd Allison
2012 J jnl
Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank.
Nucleic Acids Res.
James H. Collier, Arthur M. Lesk, Maria Garcia de la Banda, Arun Siddharth Konagurthu
2011 J jnl
Piecewise linear approximation of protein structures using the principle of minimum message length.
Bioinform.
Arun Siddharth Konagurthu, Lloyd Allison, Peter J. Stuckey, Arthur M. Lesk
2010 J jnl
A fast indexing approach for protein structure comparison.
BMC Bioinform.
Lei Zhang, James Bailey, Arun Siddharth Konagurthu, Kotagiri Ramamohanarao
2010 C conf
Design of an Efficient Out-of-Core Read Alignment Algorithm.
WABI
Arun Siddharth Konagurthu, Lloyd Allison, Thomas C. Conway, Bryan Beresford-Smith, Justin Zobel
2010 J jnl
EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.
Bioinform.
Khalid Mahmood, Arun Siddharth Konagurthu, Jiangning Song, Ashley M. Buckle, Geoffrey I. Webb, James C. Whisstock
2008 J jnl
On the origin of distribution patterns of motifs in biological networks.
BMC Syst. Biol.
Arun Siddharth Konagurthu, Arthur M. Lesk
2008 J jnl
Structural search and retrieval using a tableau representation of protein folding patterns.
Bioinform.
Arun Siddharth Konagurthu, Peter J. Stuckey, Arthur M. Lesk
2006 J jnl
Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds.
J. Comput. Biol.
Arun Siddharth Konagurthu, Peter J. Stuckey
2004 J jnl
Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs.
J. Bioinform. Comput. Biol.
Arun Siddharth Konagurthu, James C. Whisstock, Peter J. Stuckey