Arul M. Chinnaiyan

15 papers Journal 15
YearRankTypeTitle / Venue / Authors
2024 J jnl
A systematic overview of single-cell transcriptomics databases, their use cases, and limitations.
Frontiers Bioinform.
Mahnoor N. Gondal, Saad Ur Rehman Shah, Arul M. Chinnaiyan, Marcin Cieslik
2018 J jnl
MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions.
Bioinform.
Alexander Gawronski, Michael Uhl, Yajia Zhang, Yen-Yi Lin, Yashar S. Niknafs, Varune R. Ramnarine, Rohit Malik, Felix Feng, Arul M. Chinnaiyan, Colin C. Collins, Süleyman Cenk Sahinalp, Rolf Backofen
2017 J jnl
Integrative clinical genomics of metastatic cancer.
Nat.
Dan R. Robinson, Yi-Mi Wu, Robert J. Lonigro, Pankaj Vats, Erin Cobain, Jessica Everett, Xuhong Cao, Erica Rabban, Chandan Kumar-Sinha, Victoria Raymond, Scott Schuetze, Ajjai Alva, Javed Siddiqui, Rashmi Chugh, Francis Worden, Mark M. Zalupski, Jeffrey W. Innis, Rajen J. Mody, Scott A. Tomlins, David Lucas, Laurence H. Baker, Nithya Ramnath, Ann F. Schott, Daniel F. Hayes, Joseph Vijai, Kenneth Offit, Elena M. Stoffel, J. Scott Roberts, David C. Smith, Lakshmi P. Kunju, Moshe Talpaz, Marcin Cieslik, Arul M. Chinnaiyan
2016 J jnl
Two-pass alignment improves novel splice junction quantification.
Bioinform.
Brendan A. Veeneman, Sudhanshu Shukla, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Alexey I. Nesvizhskii
2015 J jnl
rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.
Bioinform.
Yang Shi, Arul M. Chinnaiyan, Hui Jiang
2012 J jnl
Gene Fusion Markup Language: a prototype for exchanging gene fusion data.
BMC Bioinform.
Shanker Kalyana-Sundaram, Achiraman Shanmugam, Arul M. Chinnaiyan
2012 J jnl
Oculus: faster sequence alignment by streaming read compression.
BMC Bioinform.
Brendan A. Veeneman, Matthew K. Iyer, Arul M. Chinnaiyan
2011 J jnl
ChimeraScan: a tool for identifying chimeric transcription in sequencing data.
Bioinform.
Matthew K. Iyer, Arul M. Chinnaiyan, Christopher A. Maher
2010 J jnl
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.
BMC Bioinform.
Zhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan
2009 J jnl
ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.
Bioinform.
You Jung Kim, Nikhil Teletia, Victor Ruotti, Christopher A. Maher, Arul M. Chinnaiyan, Ron M. Stewart, James A. Thomson, Jignesh M. Patel
2007 J jnl
A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments.
BMC Bioinform.
Hyungwon Choi, Ronglai Shen, Arul M. Chinnaiyan, Debashis Ghosh
2007 J jnl
From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research.
PLoS Comput. Biol.
Jomol P. Mathew, Barry S. Taylor, Gary D. Bader, Saiju Pyarajan, Marco Antoniotti, Arul M. Chinnaiyan, Chris Sander, Steven J. Burakoff, Bud Mishra
2006 J jnl
Eigengene-based linear discriminant model for tumor classification using gene expression microarray data.
Bioinform.
Ronglai Shen, Debashis Ghosh, Arul M. Chinnaiyan, Zhaoling Meng
2005 J jnl
Internet-based profiler system as integrative framework to support translational research.
BMC Bioinform.
Robert Kim, Francesca Demichelis, Jeffery Tang, Alberto Riva, Ronglai Shen, Doug F. Gibbs, Vasudeva Mahavishno, Arul M. Chinnaiyan, Mark A. Rubin
2002 J jnl
Mixture modelling of gene expression data from microarray experiments.
Bioinform.
Debashis Ghosh, Arul M. Chinnaiyan