Arthur J. Olson

47 papers A* 1A 1Misc 2Journal 35Unranked 8

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsid. J. Comput. Aided Mol. Des. Qinfang Sun, Avik Biswas, R. S. K. Vijayan, Pierrick Craveur, Stefano Forli, Arthur J. Olson, Andres Emanuelli Castaner, Karen Kirby, Stefan G. Sarafianos, Nan-Jie Deng, Ronald M. Levy
2021	J	`jnl`	CellPAINT: Turnkey Illustration of Molecular Cell Biology. Frontiers Bioinform. Adam Gardner, Ludovic Autin, Daniel Fuentes, Martina Maritan, Benjamin A. Barad, Michaela Medina, Arthur J. Olson, Danielle A. Grotjahn, David S. Goodsell
2020	—	`conf`	Mesoscope: A Web-based Tool for Mesoscale Data Integration and Curation. MolVa@Eurographics/EuroVis Ludovic Autin, Martina Maritan, Brett A. Barbaro, Adam Gardner, Arthur J. Olson, Michel F. Sanner, David S. Goodsell
2019	J	`jnl`	Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations. Comput. Graph. Forum Nicholas Waldin, Manuela Waldner, Mathieu Le Muzic, M. Eduard Gröller, David S. Goodsell, Ludovic Autin, Arthur J. Olson, Ivan Viola
2019	J	`jnl`	Integrative modeling of the HIV-1 ribonucleoprotein complex. PLoS Comput. Biol. David S. Goodsell, Andrew Jewett, Arthur J. Olson, Stefano Forli
2019	J	`jnl`	Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. IEEE Trans. Vis. Comput. Graph. David Kouril, Ladislav Cmolík, Barbora Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
2019	J	`jnl`	Massive-Scale Binding Free Energy Simulations of HIV Integrase Complexes Using Asynchronous Replica Exchange Framework Implemented on the IBM WCG Distributed Network. J. Chem. Inf. Model. Junchao Xia, William F. Flynn, Emilio Gallicchio, Keith Uplinger, Jonathan D. Armstrong, Stefano Forli, Arthur J. Olson, Ronald M. Levy
2019	J	`jnl`	Parallel Generation and Visualization of Bacterial Genome Structures. Comput. Graph. Forum Tobias Klein, Peter Mindek, Ludovic Autin, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
2018	J	`jnl`	CellPAINT: Interactive Illustration of Dynamic Mesoscale Cellular Environments. IEEE Computer Graphics and Applications Adam Gardner, Ludovic Autin, Brett Barbaro, Arthur J. Olson, David S. Goodsell
2018	J	`jnl`	Instant Construction and Visualization of Crowded Biological Environments. IEEE Trans. Vis. Comput. Graph. Tobias Klein, Ludovic Autin, Barbora Kozlíková, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
2016	J	`jnl`	Fragment-Based Analysis of Ligand Dockings Improves Classification of Actives. J. Chem. Inf. Model. Richard K. Belew, Stefano Forli, David S. Goodsell, T. J. O'Donnell, Arthur J. Olson
2015	J	`jnl`	A Virtual Screen Discovers Novel, Fragment-Sized Inhibitors of J. Chem. Inf. Model. Alexander L. Perryman, Weixuan Yu, Xin Wang, Sean Ekins, Stefano Forli, Shao-Gang Li, Joel S. Freundlich, Peter J. Tonge, Arthur J. Olson
2014	J	`jnl`	AutoDock4 J. Chem. Inf. Model. Diogo Santos-Martins, Stefano Forli, Maria João Ramos, Arthur J. Olson
2014	J	`jnl`	Blind prediction of HIV integrase binding from the SAMPL4 challenge. J. Comput. Aided Mol. Des. David L. Mobley, Shuai Liu, Nathan M. Lim, Karisa L. Wymer, Alexander L. Perryman, Stefano Forli, Nan-Jie Deng, Justin Su, Kim Branson, Arthur J. Olson
2014	—	`conf`	Identifying Affordances of 3D Printed Tangible Models for Understanding Core Biological Concepts. ICLS Jodi L. Davenport, Matt Silberglitt, Jon Boxerman, Arthur J. Olson
2014	J	`jnl`	Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge. J. Comput. Aided Mol. Des. Emilio Gallicchio, Nan-Jie Deng, Peng He, Lauren Wickstrom, Alexander L. Perryman, Daniel N. Santiago, Stefano Forli, Arthur J. Olson, Ronald M. Levy
2014	J	`jnl`	Virtual screening with AutoDock Vina and the common pharmacophore engine of a low diversity library of fragments and hits against the three allosteric sites of HIV integrase: participation in the SAMPL4 protein-ligand binding challenge. J. Comput. Aided Mol. Des. Alexander L. Perryman, Daniel N. Santiago, Stefano Forli, Diogo Santos-Martins, Arthur J. Olson
2014	J	`jnl`	Visual Analytics for Biological Data. IEEE Computer Graphics and Applications Raghu Machiraju, Carsten Görg, Arthur J. Olson
2013	J	`jnl`	Automated Docking with Protein Flexibility in the Design of Femtomolar "Click Chemistry" Inhibitors of Acetylcholinesterase. J. Chem. Inf. Model. Garrett M. Morris, Luke G. Green, Zoran Radic, Palmer Taylor, K. Barry Sharpless, Arthur J. Olson, Flavio Grynszpan
2012	J	`jnl`	Cyclin-dependent kinases 5 template: Useful for virtual screening. Comput. Biol. Medicine Siripit Pitchuanchom, Chantana Boonyarat, Stefano Forli, Arthur J. Olson, Chavi Yenjai
2012	J	`jnl`	Protein Flexibility in Virtual Screening: The BACE-1 Case Study. J. Chem. Inf. Model. Sandro Cosconati, Luciana Marinelli, Francesco Saverio Di Leva, Valeria La Pietra, Angela De Simone, Francesca Mancini, Vincenza Andrisano, Ettore Novellino, David S. Goodsell, Arthur J. Olson
2012	J	`jnl`	uPy: A Ubiquitous CG Python API with Biological-Modeling Applications. IEEE Computer Graphics and Applications Ludovic Autin, Graham Johnson, Johan Hake, Arthur J. Olson, Michel F. Sanner
2011	J	`jnl`	Robust Scoring Functions for Protein-Ligand Interactions with Quantum Chemical Charge Models. J. Chem. Inf. Model. Jui-Chih Wang, Jung-Hsin Lin, Chung-Ming Chen, Alex L. Perryman, Arthur J. Olson
2010	J	`jnl`	AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J. Comput. Chem. Oleg Trott, Arthur J. Olson
2009	J	`jnl`	AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J. Comput. Chem. Garrett M. Morris, Ruth Huey, William Lindstrom, Michel F. Sanner, Richard K. Belew, David S. Goodsell, Arthur J. Olson
2008	J	`jnl`	Empirical entropic contributions in computational docking: Evaluation in APS reductase complexes. J. Comput. Chem. Max W. Chang, Richard K. Belew, Kate S. Carroll, Arthur J. Olson, David S. Goodsell
2007	J	`jnl`	A semiempirical free energy force field with charge-based desolvation. J. Comput. Chem. Ruth Huey, Garrett M. Morris, Arthur J. Olson, David S. Goodsell
2007	J	`jnl`	Analysis of HIV Wild-Type and Mutant Structures via in Silico Docking against Diverse Ligand Libraries. J. Chem. Inf. Model. Max W. Chang, William Lindstrom, Arthur J. Olson, Richard K. Belew
2005	J	`jnl`	Tangible Augmented Interfaces for Structural Molecular Biology. IEEE Computer Graphics and Applications Alexandre Gillet, Michel F. Sanner, Daniel Stoffler, Arthur J. Olson
2004	A	`conf`	Augmented Reality with Tangible Auto-Fabricated Models for Molecular Biology Applications. IEEE Visualization Alexandre Gillet, Michel F. Sanner, Daniel Stoffler, David S. Goodsell, Arthur J. Olson
2004	—	`conf`	Computer-linked autofabricated 3D models for teaching structural biology. SIGGRAPH Sketches Alexandre Gillet, Suzanne Weghorst, William Winn, Daniel Stoffler, Michel F. Sanner, David S. Goodsell, Arthur J. Olson
2003	J	`jnl`	Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modeling. J. Comput. Aided Mol. Des. Robin J. Rosenfeld, David S. Goodsell, Rabi A. Musah, Garrett M. Morris, David B. Goodin, Arthur J. Olson
2003	—	`conf`	Integrating Biomolecular Analysis and Visual Programming: Flexibility and Interactivity in the Design of Bioinformatics Tools. HICSS Daniel Stoffler, Sophie I. Coon, Ruth Huey, Arthur J. Olson, Michel F. Sanner
2003	—	`conf`	Role of Haptics in Teaching Structural Molecular Biolog. HAPTICS Ganesh Sankaranarayanan, Suzanne Weghorst, Michel F. Sanner, Alexandre Gillet, Arthur J. Olson
2002	Misc	`conf`	Segmentation and 3D visualization of high-resolution human brain cryosections. Visualization and Data Analysis Ikuko Takanashi, Eric B. Lum, Kwan-Liu Ma, Jörg Meyer, Bernd Hamann, Arthur J. Olson
1999	Misc	`conf`	Integrating Computation and Visualization for Biomolecular Analysis: An Example Using Python and AVS. Pacific Symposium on Biocomputing Michel F. Sanner, Bruce S. Duncan, C. J. Carrillo, Arthur J. Olson
1998	J	`jnl`	Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. Garrett M. Morris, David S. Goodsell, Robert S. Halliday, Ruth Huey, William E. Hart, Richard K. Belew, Arthur J. Olson
1998	J	`jnl`	Computational Coevolution of Antiviral Drug Resistance. Artif. Life Christopher D. Rosin, Richard K. Belew, Garrett M. Morris, Arthur J. Olson, David S. Goodsell
1996	—	`conf`	Applications of Evolutionary Programming for the Prediction of Protein-Protein Interactions. Evolutionary Programming Bruce S. Duncan, Arthur J. Olson
1996	J	`jnl`	Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4. J. Comput. Aided Mol. Des. Garrett M. Morris, David S. Goodsell, Ruth Huey, Arthur J. Olson
1996	J	`jnl`	Lattice modeling: Accuracy of energy calculations. J. Comput. Chem. Boris A. Reva, Michel F. Sanner, Arthur J. Olson, Alexei V. Finkelstein
1995	J	`jnl`	Constructing Lattice Models of Protein Chains with Side Groups. J. Comput. Biol. Boris A. Reva, Dmitrii S. Rykunov, Arthur J. Olson, Alexei V. Finkelstein
1995	—	`conf`	Fast and Robust Computation of Molecular Surfaces. SCG Michel F. Sanner, Arthur J. Olson, Jean-Claude Spehner
1989	—	`conf`	Molecular applications of volume rendering and 3-D texture maps. VVS David S. Goodsell, Arthur J. Olson
1985	J	`jnl`	GRANNY, a companion to GRAMPS for the real-time manipulation of macromolecular models. Comput. Chem. Michael L. Connolly, Arthur J. Olson
1983	J	`jnl`	Cooperative programming in crich ystallography. Comput. Chem. Richard A. Alden, Gerard Bricogne, Stephan T. Freer, Sid R. Hall, Wayne A. Hendrickson, Penelope Anne Machin, Robert J. Munn, Arthur J. Olson, George N. Reeke Jr.
1981	A*	`conf`	GRAMPS - A graphics language interpreter for real-time, interactive, three-dimensional picture editing and animation. SIGGRAPH T. J. O'Donnell, Arthur J. Olson