Artemis G. Hatzigeorgiou

58 papers B 5C 3Journal 40Unranked 10
YearRankTypeTitle / Venue / Authors
2025 J jnl
Bottlenecks in advancing and applying multiomic data integration - common data resources as rate-limiting drivers - the high-impact use case of atherosclerotic cardiovascular disease.
Briefings Bioinform.
Stephanie Bezzina Wettinger, Kanita Karaduzovic-Hadziabdic, Ritienne Attard, Rosienne Farrugia, Brooke N. Wolford, Marco Chierici, Giuseppe Jurman, Panagiotis Alexiou, José L. Peñalvo, Rafael S. Costa, José Basilio, Frantisek Sabovcik, Rui Vitorino, Johannes A. Schmid, Rajesh Shigdel, Baiba Vilne, Artemis G. Hatzigeorgiou, Miron Sopic, Yvan Devaux, Paolo Magni, Maria Tellez-Plaza, David P. Kreil, Aleksandra Gruca
2025 J jnl
microT-CNN: an avant-garde deep convolutional neural network unravels functional miRNA targets beyond canonical sites.
Briefings Bioinform.
Elissavet Zacharopoulou, Maria D. Paraskevopoulou, Spyros Tastsoglou, Athanasios Alexiou, Anna Karavangeli, Vasileios Pierros, Stefanos Digenis, Galatea Mavromati, Artemis G. Hatzigeorgiou, Dimitra Karagkouni
2024 C conf
A Machine Learning algorithm for Predicting Translation Initiation Start Positions.
CIBCB
Stefanos Digenis, Dimitris Grigoriadis, Marios Miliotis, Artemis G. Hatzigeorgiou
2024 C conf
Leveraging Large Language Models for Information Extraction: Identifying microRNA - Gene Interactions in Biomedical Literature.
CIBCB
Steve Stavropoulos, Elissavet Zacharopoulou, Spiros V. Georgakopoulos, Sotiris K. Tasoulis, Vassilis P. Plagianakos, Artemis G. Hatzigeorgiou
2023 J jnl
DIANA-miRPath v4.0: expanding target-based miRNA functional analysis in cell-type and tissue contexts.
Nucleic Acids Res.
Spyros Tastsoglou, Giorgos Skoufos, Marios Miliotis, Dimitra Karagkouni, Ioannis Koutsoukos, Anna Karavangeli, Filippos S. Kardaras, Artemis G. Hatzigeorgiou
2023 J jnl
DIANA-microT 2023: including predicted targets of virally encoded miRNAs.
Nucleic Acids Res.
Spyros Tastsoglou, Athanasios Alexiou, Dimitra Karagkouni, Giorgos Skoufos, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou
2022 J jnl
DIANA-miTED: a microRNA tissue expression database.
Nucleic Acids Res.
Ioannis Kavakiotis, Athanasios Alexiou, Spyros Tastsoglou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou
2022 J jnl
DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data.
BMC Bioinform.
Dimitris Grigoriadis, Nikos Perdikopanis, Georgios K. Georgakilas, Artemis G. Hatzigeorgiou
2021 J jnl
DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs.
Nucleic Acids Res.
Nikos Perdikopanis, Georgios K. Georgakilas, Dimitris Grigoriadis, Vasileios Pierros, Ioannis Kavakiotis, Panagiotis Alexiou, Artemis G. Hatzigeorgiou
2021 J jnl
Peryton: a manual collection of experimentally supported microbe-disease associations.
Nucleic Acids Res.
Giorgos Skoufos, Filippos S. Kardaras, Athanasios Alexiou, Ioannis Kavakiotis, Anastasia Lambropoulou, Vasiliki Kotsira, Spyros Tastsoglou, Artemis G. Hatzigeorgiou
2021 J jnl
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.
Nucleic Acids Res.
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
2020 J jnl
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts.
Nucleic Acids Res.
Dimitra Karagkouni, Maria D. Paraskevopoulou, Spyros Tastsoglou, Giorgos Skoufos, Anna Karavangeli, Vasileios Pierros, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou
2020 — conf
DiS-TSS: An Annotation Agnostic Algorithm for TSS Identification.
IWBBIO
Dimitris Grigoriadis, Nikos Perdikopanis, Georgios K. Georgakilas, Artemis G. Hatzigeorgiou
2018 J jnl
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.
Nucleic Acids Res.
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2018 J jnl
ECCB 2018: The 17th European Conference on Computational Biology.
Bioinform.
Artemis G. Hatzigeorgiou, Pantelis G. Bagos, Panayiotis V. Benos, Christoforos Nikolaou, Yves Moreau, Ioannis Kavakiotis
2016 J jnl
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2016 J jnl
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.
Nucleic Acids Res.
Georgios K. Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2016 J jnl
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data.
Nucleic Acids Res.
Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2015 J jnl
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions.
Nucleic Acids Res.
Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2015 J jnl
DIANA-miRPath v3.0: deciphering microRNA function with experimental support.
Nucleic Acids Res.
Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2015 B conf
MirPub v2: Towards Ranking and Refining miRNA Publication Search Results.
TPDL
Ilias Kanellos, Vasiliki Vlachokyriakou, Thanasis Vergoulis, Georgios K. Georgakilas, Yannis Vassiliou, Artemis G. Hatzigeorgiou, Theodore Dalamagas
2015 B conf
TarMiner: automatic extraction of miRNA targets from literature.
SSDBM
Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Theodore Dalamagas
2015 J jnl
mirPub: a database for searching microRNA publications.
Bioinform.
Thanasis Vergoulis, Ilias Kanellos, Nikos Kostoulas, Georgios K. Georgakilas, Timos K. Sellis, Artemis G. Hatzigeorgiou, Theodore Dalamagas
2014 B conf
MR-microT: a MapReduce-based MicroRNA target prediction method.
SSDBM
Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou, Stelios Sartzetakis, Timos K. Sellis
2014 — conf
Publishing Diachronic Life Science Linked Data.
SWAT4LS
Katerina Gkirtzou, Thanasis Vergoulis, Artemis G. Hatzigeorgiou, Timos K. Sellis, Theodore Dalamagas
2013 J jnl
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore M. Dalamagas, Artemis G. Hatzigeorgiou
2013 J jnl
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.
Nucleic Acids Res.
Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2012 J jnl
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.
Nucleic Acids Res.
Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2012 J jnl
Functional microRNA targets in protein coding sequences.
Bioinform.
Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou
2012 J jnl
Publishing Life Science Data as Linked Open Data: the Case Study of miRBase
CoRR
Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas, Artemis G. Hatzigeorgiou
2012 — conf
Publishing life science data as linked open data: the case study of miRBase.
WOD
Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas, Artemis G. Hatzigeorgiou
2012 B conf
TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction.
SSDBM
Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis
2012 J jnl
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.
Nucleic Acids Res.
Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2011 J jnl
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association.
Nucleic Acids Res.
Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou
2010 J jnl
FreePub: Collecting and Organizing Scientific Material Using Mindmaps
CoRR
Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou
2010 — conf
FreePub: Collecting and Organizing Scientific Material Using Mindmaps.
SWAT4LS
Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou
2010 — conf
Predicting miRNA targets utilizing an Extended Profile HMM.
GCB
Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch
2010 J jnl
miRGen 2.0: a database of microRNA genomic information and regulation.
Nucleic Acids Res.
Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou
2009 J jnl
Accurate microRNA target prediction correlates with protein repression levels.
BMC Bioinform.
Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou
2009 J jnl
DIANA-microT web server: elucidating microRNA functions through target prediction.
Nucleic Acids Res.
Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou
2009 J jnl
DIANA-mirPath: Integrating human and mouse microRNAs in pathways.
Bioinform.
Giorgos L. Papadopoulos, Panagiotis Alexiou, Manolis Maragkakis, Martin Reczko, Artemis G. Hatzigeorgiou
2009 J jnl
Lost in translation: an assessment and perspective for computational microRNA target identification.
Bioinform.
Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou
2009 J jnl
The database of experimentally supported targets: a functional update of TarBase.
Nucleic Acids Res.
Giorgos L. Papadopoulos, Martin Reczko, Victor A. Simossis, Praveen Sethupathy, Artemis G. Hatzigeorgiou
2007 J jnl
Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction.
PLoS Comput. Biol.
Axel Bernal, Koby Crammer, Artemis G. Hatzigeorgiou, Fernando Pereira
2007 J jnl
miRGen: a database for the study of animal microRNA genomic organization and function.
Nucleic Acids Res.
Molly Megraw, Praveen Sethupathy, Benoit Corda, Artemis G. Hatzigeorgiou
2006 — conf
Simple Methods of Finding Short Protein Coding Sequences.
BIOCOMP
Hanno Hinsch, Artemis G. Hatzigeorgiou
2006 — conf
Support Vector Machines for Predicting microRNA Hairpins.
BIOCOMP
Karol Szafranski, Molly Megraw, Martin Reczko, Artemis G. Hatzigeorgiou
2005 — conf
Computational Identification of Regulatory Factors Involved in MicroRNA Transcription.
Panhellenic Conference on Informatics
Praveen Sethupathy, Molly Megraw, M. Inmaculada Barrasa, Artemis G. Hatzigeorgiou
2002 J jnl
Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review.
Informatica (Slovenia)
Vladimir B. Bajic, Suisheng Tang, Hao Han, Vladimir Brusic, Artemis G. Hatzigeorgiou
2002 C conf
Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks.
WABI
Martin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou
2002 J jnl
Translation initiation start prediction in human cDNAs with high accuracy.
Bioinform.
Artemis G. Hatzigeorgiou
2001 J jnl
DIANA-EST: a statistical analysis.
Bioinform.
Artemis G. Hatzigeorgiou, Petko Fiziev, Martin Reczko
2000 J jnl
Prediction of human transnational initiation sites using a multiple neural network approach.
Int. J. Comput. Syst. Signals
Christian Derst, Martin Reczko, Artemis G. Hatzigeorgiou
2000 — conf
Translation Initiation Site Prediction in Eucariotic MRNAs with High Accuracy.
German Conference on Bioinformatics
Artemis G. Hatzigeorgiou
1999 B conf
Feature recognition on expressed sequence tags of human DNA.
IJCNN
Artemis G. Hatzigeorgiou, Martin Reczko
1996 J jnl
Computational analysis of transcriptional regulatory elements: a field in flux.
Comput. Appl. Biosci.
Philipp Bucher, James W. Fickett, Artemis G. Hatzigeorgiou
1996 — conf
Detection of Eukaryotic POL II Promoters with Multi-State Time-Delay Neural Networks.
German Conference on Bioinformatics
Niels Mache, Paul Levi, Artemis G. Hatzigeorgiou, Martin Reczko
1995 J jnl
A parallel neural network simulator on the connection machine CM-5.
Comput. Appl. Biosci.
Martin Reczko, Artemis G. Hatzigeorgiou, Niels Mache, Andreas Zell, Sándor Suhai