Artem Lysenko

21 papers B 1Journal 16Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
Optimal normalization in quantum-classical hybrid models for anti-cancer drug response prediction.
CoRR
Takafumi Ito, Artem Lysenko, Tatsuhiko Tsunoda
2025 J jnl
VBayesMM: variational Bayesian neural network to prioritize important relationships of high-dimensional microbiome multiomics data.
Briefings Bioinform.
Tung Dang, Artem Lysenko, Keith A. Boroevich, Tatsuhiko Tsunoda
2025 J jnl
scHDeepInsight: a hierarchical deep learning framework for precise immune cell annotation in single-cell RNA-seq data.
Briefings Bioinform.
Shangru Jia, Artem Lysenko, Keith A. Boroevich, Alok Sharma, Tatsuhiko Tsunoda
2023 J jnl
scDeepInsight: a supervised cell-type identification method for scRNA-seq data with deep learning.
Briefings Bioinform.
Shangru Jia, Artem Lysenko, Keith A. Boroevich, Alok Sharma, Tatsuhiko Tsunoda
2021 J jnl
DeepFeature: feature selection in nonimage data using convolutional neural network.
Briefings Bioinform.
Alok Sharma, Artem Lysenko, Keith A. Boroevich, Edwin Vans, Tatsuhiko Tsunoda
2019 J jnl
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures.
Briefings Bioinform.
Mansoor A. S. Saqi, Artem Lysenko, Yike Guo, Tatsuhiko Tsunoda, Charles Auffray
2017 J jnl
Arete - candidate gene prioritization using biological network topology with additional evidence types.
BioData Min.
Artem Lysenko, Keith A. Boroevich, Tatsuhiko Tsunoda
2017 J jnl
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer.
J. Comput. Biol.
Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray
2017 J jnl
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks.
Bioinform.
Irina Balaur, Alexander Mazein, Mansoor A. S. Saqi, Artem Lysenko, Christopher J. Rawlings
2016 J jnl
Representing and querying disease networks using graph databases.
BioData Min.
Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray
2013 — conf
A Framework for Mining Life Sciences Data on the Semantic Web in an Interactive, Graph-Based Environment.
CIBB
Artem Lysenko, Jacek Grzebyta, Matthew Morritt Hindle, Christopher J. Rawlings, Andrea Splendiani
2013 B conf
Integrating Multiple Studies of Wheat Microarray Data to Identify Treatment-Specific Regulatory Networks.
IDA
Valeria Bo, Artem Lysenko, Mansoor A. S. Saqi, Dimah Z. Habash, Allan Tucker
2012 — conf
Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum.
CMSB
Laura Bennett, Artem Lysenko, Lazaros G. Papageorgiou, Martin Urban, Kim E. Hammond-Kosack, Christopher J. Rawlings, Mansoor A. S. Saqi, Sophia Tsoka
2011 J jnl
AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations.
BMC Bioinform.
Michael Defoin-Platel, Matthew Morritt Hindle, Artem Lysenko, Stephen J. Powers, Dimah Z. Habash, Christopher J. Rawlings, Mansoor A. S. Saqi
2011 J jnl
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.
BMC Bioinform.
Artem Lysenko, Michael Defoin-Platel, Keywan Hassani-Pak, Jan Taubert, Charlie Hodgman, Christopher J. Rawlings, Mansoor A. S. Saqi
2010 — conf
Analysis and Visualisation of RDF Resources in Ondex.
SWAT4LS
Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings
2010 J jnl
Analysis and visualisation of RDF resources in Ondex
CoRR
Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings
2010 J jnl
Data integration for plant genomics - exemplars from the integration of
Briefings Bioinform.
Artem Lysenko, Matthew Morritt Hindle, Jan Taubert, Mansoor A. S. Saqi, Christopher J. Rawlings
2009 J jnl
Data integration for plant genomics - exemplars from the integration of
Briefings Bioinform.
Artem Lysenko, Matthew Morritt Hindle, Jan Taubert, Mansoor A. S. Saqi, Christopher J. Rawlings
2009 — conf
Linking Life Sciences Data Using Graph-Based Mapping.
DILS
Jan Taubert, Matthew Hindle, Artem Lysenko, Jochen Weile, Jacob Köhler, Christopher J. Rawlings
2008 J jnl
Graph-based sequence annotation using a data integration approach.
J. Integr. Bioinform.
Robert Pesch, Artem Lysenko, Matthew Hindle, Keywan Hassani-Pak, Ralf Thiele, Christopher J. Rawlings, Jacob Köhler, Jan Taubert