Arrate Muñoz-Barrutia

73 papers B 4Journal 40Unranked 28

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	OREHAS: A fully automated deep-learning pipeline for volumetric endolymphatic hydrops quantification in MRI. CoRR Caterina Fuster-Barceló, Claudia Castrillón, Laura Rodrigo-Muñoz, Victor Manuel Suárez-Vega, Nicolás Pérez-Fernández, Gorka Bastarrika, Arrate Muñoz-Barrutia
2025	J	`jnl`	Alzheimer's Disease Detection in EEG Sleep Signals. IEEE J. Biomed. Health Informatics Lorena Gallego-Viñarás, Juan Miguel Mira-Tomas, Anna Michela-Gaeta, Gerard Pinol-Ripoll, Ferrán Barbé, Pablo M. Olmos, Arrate Muñoz-Barrutia
2025	J	`jnl`	Multimodal Posterior Sampling-based Uncertainty in PD-L1 Segmentation from H&E Images. CoRR Roman Kinakh, Gonzalo R. Ríos-Muñoz, Arrate Muñoz-Barrutia
2025	J	`jnl`	SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model. CoRR Carlos Garcia-Lopez-de-Haro, Caterina Fuster-Barceló, Curtis T. Rueden, Jónathan Heras, Vladimír Ulman, Daniel Franco-Barranco, Adrián Inés, Kevin W. Eliceiri, Jean-Christophe Olivo-Marin, Jean-Yves Tinevez, Daniel Sage, Arrate Muñoz-Barrutia
2025	J	`jnl`	Scaffolding Collaborative Learning in STEM: A Two-Year Evaluation of a Tool-Integrated Project-Based Methodology. CoRR Caterina Fuster-Barceló, Gonzalo R. Ríos-Muñoz, Arrate Muñoz-Barrutia
2025	—	`conf`	Super-Resolution Benchmarking for 3D Image-to-Image Fusion Problem. ISBI Daniel Franco-Barranco, Aitor González-Marfil, Albert Cardona, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
2025	J	`jnl`	The impact of gamification on learning outcomes: experiences from a Biomedical Engineering course. CoRR Gonzalo R. Ríos-Muñoz, Caterina Fuster-Barceló, Arrate Muñoz-Barrutia
2024	J	`jnl`	Alzheimer's disease detection in PSG signals. CoRR Lorena Gallego-Viñarás, Juan Miguel Mira-Tomas, Anna Michela-Gaeta, Gerard Pinol-Ripoll, Ferrán Barbé, Pablo M. Olmos, Arrate Muñoz-Barrutia
2024	—	`conf`	Calibration Methods for Alzheimer Disease Detection. MLSP Lorena Gallego-Viñarás, Anna Michela-Gaeta, Gerard Pinol-Ripoll, Ferrán Barbé, Pablo M. Olmos, Arrate Muñoz-Barrutia
2023	J	`jnl`	ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Analysis. Sensors Laura Nicolás-Sáenz, Agapito Ledezma, Javier Pascau, Arrate Muñoz-Barrutia
2023	—	`conf`	BiaPy: a ready-to-use library for Bioimage Analysis Pipelines. ISBI Daniel Franco-Barranco, Jesús A. Andrés-San Román, Pedro Gómez-Gálvez, Luis M. Escudero, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
2023	J	`jnl`	BioImage.IO Chatbot: A Personalized Assistant for BioImage Analysis Augmented by Community Knowledge Base. CoRR Wanlu Lei, Caterina Fuster-Barceló, Arrate Muñoz-Barrutia, Wei Ouyang
2023	J	`jnl`	From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee. IEEE Signal Process. Mag. Selin Aviyente, Alejandro F. Frangi, Erik Meijering, Arrate Muñoz-Barrutia, Michael Liebling, Dimitri Van De Ville, Jean-Christophe Olivo-Marin, Jelena Kovacevic, Michael Unser
2022	J	`jnl`	ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Segmentation. CoRR Laura Nicolás-Sáenz, Agapito Ledezma, Javier Pascau, Arrate Muñoz-Barrutia
2022	J	`jnl`	Deep learning based domain adaptation for mitochondria segmentation on EM volumes. Comput. Methods Programs Biomed. Daniel Franco-Barranco, Julio Pastor-Tronch, Aitor González-Marfil, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
2022	J	`jnl`	Deep learning based domain adaptation for mitochondria segmentation on EM volumes. CoRR Daniel Franco-Barranco, Julio Pastor-Tronch, Aitor González-Marfil, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
2022	J	`jnl`	Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes. Neuroinformatics Daniel Franco-Barranco, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
2022	J	`jnl`	Translational Lung Imaging Analysis Through Disentangled Representations. CoRR Pedro M. Gordaliza, Juan José Vaquero, Arrate Muñoz-Barrutia
2021	—	`conf`	Delta-Radiomics Signature For Prediction Of Survival In Advanced Nsclc Patients Treated With Immunotherapy. ISBI Benito Farina, na Delia Ramos Guerra, Carmelo Palacios Miras, Guillermo Gallardo Madueño, Arrate Muñoz-Barrutia, German R. Peces-Barba, Luis Miguel Seijo Maceiras, Jesús Corral, Ignacio Gil-Bazo, Manuel Dómine Gómez, María J. Ledesma-Carbayo
2021	J	`jnl`	Molecular Imaging of Pulmonary Tuberculosis in an Ex-Vivo Mouse Model Using Spectral Photon-Counting Computed Tomography and Micro-CT. IEEE Access Chiara Lowe, Ana Ortega-Gil, Mahdieh Moghiseh, Nigel G. Anderson, Arrate Muñoz-Barrutia, Juan José Vaquero, Aamir Younas Raja, Aysouda Matanaghi, Alexander I. Chernoglazov, Theodorus Dapamede, Sikiru A. Adebileje, Steven Alexander, Maya R. Amma, Marzieh Anjomrouz, Fatemeh Asghariomabad, Ali Atharifard, James Atlas, Kenzie Baer, Stephen T. Bell, Srinidhi Bheesette, Philip H. Butler, Pierre Carbonez, Claire Chambers, Krishna M. Chapagain, Jennifer A. Clark, Frances Colgan, Jonathan S. Crighton, Shishir Dahal, Jérôme Damet, Niels J. A. De Ruiter, Robert M. N. Doesburg, Neryda Duncan, Nooshin Ghodsian, Steven P. Gieseg, Brian P. Goulter, Sam Gurney, Joseph L. Healy, Praveen Kumar Kanithi, Tracy Kirkbride, Stuart P. Lansley, V. B. H. Mandalika, Emmanuel Marfo, David Palmer, Raj K. Panta, Hannah M. Prebble, Peter Renaud, Yann Sayous, Nanette Schleich, Emily Searle, Jereena S. Sheeja, Lieza Vanden Broeke, Vivek V. S., E. Peter Walker, Michael F. Walsh, Manoj Wijesooriya, W. Ross Younger, Anthony P. H. Butler
2021	J	`jnl`	Search for temporal cell segmentation robustness in phase-contrast microscopy videos. CoRR Estibaliz Gómez-de-Mariscal, Hasini Jayatilaka, Özgün Çiçek, Thomas Brox, Denis Wirtz, Arrate Muñoz-Barrutia
2021	J	`jnl`	Stable deep neural network architectures for mitochondria segmentation on electron microscopy volumes. CoRR Daniel Franco-Barranco, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
2020	J	`jnl`	ANHIR: Automatic Non-Rigid Histological Image Registration Challenge. IEEE Trans. Medical Imaging Jirí Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, Alexander V. Khvostikov, Spyridon Bakas, Eric I-Chao Chang, Stefan Heldmann, Kimmo Kartasalo, Leena Latonen, Johannes Lotz, Michelle Noga, Sarthak Pati, Kumaradevan Punithakumar, Pekka Ruusuvuori, Andrzej Skalski, Nazanin Tahmasebi, Masi Valkonen, Ludovic Venet, Yizhe Wang, Nick Weiss, Marek Wodzinski, Yu Xiang, Yan Xu, Yan Yan, Paul A. Yushkevich, Shengyu Zhao, Arrate Muñoz-Barrutia
2020	J	`jnl`	Development of an Inverted Epifluorescence Microscope for Long-Term Monitoring of Bacteria in Multiplexed Microfluidic Devices. Sensors Amaro Torres-Simón, María Henar Marino, Clara Gómez-Cruz, Marina Cañadas, Miguel Marco, Jorge Ripoll, Juan José Vaquero, Arrate Muñoz-Barrutia
2020	J	`jnl`	Editorial: Introduction to the Issue on Domain Enriched Learning for Medical Imaging. IEEE J. Sel. Top. Signal Process. Vishal Monga, Scott T. Acton, Abd-Krim Seghouane, Arrate Muñoz-Barrutia, Jong Chul Ye
2020	J	`jnl`	Guest Editorial: Special Issue on Imaging-Based Diagnosis of COVID-19. IEEE Trans. Medical Imaging Dinggang Shen, Yaozong Gao, Arrate Muñoz-Barrutia, Delia Cabrera DeBuc, Gennaro Percannella
2020	J	`jnl`	MosaicExplorerJ: Interactive stitching of terabyte-size tiled datasets from lightsheet microscopy. F1000Research Sébastien Tosi, Lídia Bardia, Maria Jose Barallobre, Arrate Muñoz-Barrutia, María Luisa Soto-Montenegro, Julien Colombelli
2020	J	`jnl`	Nonlinear Image Registration and Pixel Classification Pipeline for the Study of Tumor Heterogeneity Maps. Entropy Laura Nicolás-Sáenz, Sara Guerrero-Aspizua, Javier Pascau, Arrate Muñoz-Barrutia
2019	J	`jnl`	Dynamic Atlas-Based Segmentation and Quantification of Neuromelanin-Rich Brainstem Structures in Parkinson Disease. IEEE Trans. Medical Imaging Mikel Ariz, Ricardo C. Abad, Gabriel Castellanos, Martin Martinez, Arrate Muñoz-Barrutia, María A. Fernández-Seara, Pau Pastor, María A. Pastor, Carlos Ortiz-de-Solorzano
2019	—	`conf`	Tuberculosis Lesions in CT Images Inferred using 3D-CNN and Multi-Task Learning. ISBI Pedro M. Gordaliza, Juan José Vaquero, Sally Sharpe, Fergus Gleeson, Arrate Muñoz-Barrutia
2018	B	`conf`	Benchmarking of Image Registration Methods for Differently Stained Histological Slides. ICIP Jirí Borovec, Arrate Muñoz-Barrutia, Jan Kybic
2018	J	`jnl`	Spotlight on Bioimaging and Signal Processing [In the Spotlight]. IEEE Signal Process. Mag. Erik Meijering, Arrate Muñoz-Barrutia
2018	—	`conf`	Towards an informational model for tuberculosis lesion discrimination on X-ray CT images. ISBI Pedro M. Gordaliza, Juan José Vaquero, Sally Sharpe, Manuel Desco, Arrate Muñoz-Barrutia
2018	—	`conf`	Tuberculosis Histopathology on X Ray CT. RAMBO+BIA+TIA@MICCAI Ana Ortega-Gil, Arrate Muñoz-Barrutia, Laura Fernandez-Terron, Juan José Vaquero
2017	—	`conf`	Automated analysis of collagen networks via microscopy. EUSIPCO Alejandro Sune-Aunon, Mario Gonzalez-Arjona, Alejandro Vidal, Javier Lanillos, Arrate Muñoz-Barrutia
2017	J	`jnl`	Full L BMC Bioinform. Alejandro Sune-Aunon, Álvaro Jorge-Peñas, Rocío Aguilar-Cuenca, Miguel Vicente-Manzanares, Hans Van Oosterwyck, Arrate Muñoz-Barrutia
2017	—	`conf`	Super-resolved Traction Force Microscopy over whole cells. ISBI Alejandro Sune-Aunon, Álvaro Jorge-Peñas, Hans Van Oosterwyck, Arrate Muñoz-Barrutia
2016	—	`conf`	L1-regularized reconstruction for traction force microscopy. ISBI Alejandro Sune-Aunon, Álvaro Jorge-Peñas, Hans Van Oosterwyck, Arrate Muñoz-Barrutia
2015	—	`conf`	Atlas-based segmentation of brainstem regions in neuromelanin-sensitive magnetic resonance images. Computer-Aided Diagnosis Marc Puigvert, Gabriel Castellanos, Javier Uranga, Ricardo C. Abad, María A. Fernández-Seara, Pau Pastor, María A. Pastor, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2015	—	`conf`	Characterization of the role of collagen network structure and composition in cancer cell migration. EMBC María Anguiano, Carlos Castilla, Martin Maska, Cristina Ederra, Javier Fernández-Marqués, Rafael Peláez, Ana Rouzaut, Arrate Muñoz-Barrutia, Michal Kozubek, Carlos Ortiz-de-Solorzano
2015	—	`conf`	Quantification of pulmonary vessel diameter in low-dose CT images. Computer-Aided Diagnosis Rina Dewi Rudyanto, Carlos Ortiz-de-Solórzano, Arrate Muñoz-Barrutia
2015	B	`conf`	Quantification of the 3D collagen network geometry in confocal reflection microscopy. ICIP Martin Maska, Cristina Ederra, Javier Fernández-Marqués, Arrate Muñoz-Barrutia, Michal Kozubek, Carlos Ortiz-de-Solorzano
2015	J	`jnl`	Quantitative Bioimaging: Signal Processing in Light Microscopy [From the Guest Editors]. IEEE Signal Process. Mag. Arrate Muñoz-Barrutia, Jelena Kovacevic, Michal Kozubek, Erik Meijering, Braham Parvin
2015	J	`jnl`	Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling. IEEE Signal Process. Mag. Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek
2014	J	`jnl`	A Novel Automated Microscopy Platform for Multiresolution Multispectral Early Detection of Lung Cancer Cells in Bronchoalveolar Lavage Samples. IEEE Syst. J. Thomas Pengo, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2014	J	`jnl`	A benchmark for comparison of cell tracking algorithms. Bioinform. Martin Maska, Vladimír Ulman, David Svoboda, Pavel Matula, Petr Matula, Cristina Ederra, Ainhoa Urbiola, Tomás España, Subramanian Venkatesan, Deepak M. W. Balak, Pavel Karas, Tereza Bolcková, Markéta Streitová, Craig Carthel, Stefano Coraluppi, Nathalie Harder, Karl Rohr, Klas E. G. Magnusson, Joakim Jaldén, Helen M. Blau, Oleh Dzyubachyk, Pavel Krízek, Guy M. Hagen, David Pastor-Escuredo, Daniel Jimenez-Carretero, María J. Ledesma-Carbayo, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek, Carlos Ortiz-de-Solorzano
2013	—	`conf`	Automatic quantification of filopodia-based cell migration. ISBI Martin Maska, Xabier Morales, Arrate Muñoz-Barrutia, Ana Rouzaut, Carlos Ortiz-de-Solorzano
2013	J	`jnl`	Individual nodule tracking in micro-CT images of a longitudinal lung cancer mouse model. Medical Image Anal. Rina Dewi Rudyanto, Gorka Bastarrika, Gabriel de Biurrun, Jackeline Agorreta, Luis M. Montuenga, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
2013	—	`conf`	Modeling airway probability. ISBI Rina Dewi Rudyanto, Arrate Muñoz-Barrutia, Alejandro A. Díaz, James C. Ross, George R. Washko, Carlos Ortiz-de-Solorzano, Raúl San José Estépar
2013	—	`conf`	Registration of multiple stained histological sections. ISBI Jirí Borovec, Jan Kybic, Michael Busta, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
2013	J	`jnl`	Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. IEEE Trans. Medical Imaging Martin Maska, Ondrej Danek, Saray Garasa, Ana Rouzaut, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2012	—	`conf`	Characterization of emphysema in low dose computed tomography images using maximum likelihood estimation of the scale exponent. ISBI Mario Ceresa, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2012	—	`conf`	Detecting airway remodeling in COPD and emphysema using low-dose CT imaging. Computer-Aided Diagnosis Rina Dewi Rudyanto, Mario Ceresa, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solórzano
2012	—	`conf`	Fast tracking of fluorescent cells based on the Chan-Vese model. ISBI Martin Maska, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2012	—	`conf`	Individual nodule tracking in micro-CT images of a mouse model of lung cancer. ISBI Rina Dewi Rudyanto, Ainhoa Agirre, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
2012	J	`jnl`	Quantification of Lung Damage in an Elastase-Induced Mouse Model of Emphysema. Int. J. Biomed. Imaging Arrate Muñoz-Barrutia, Mario Ceresa, Xabier Artaechevarria, Luis M. Montuenga, Carlos Ortiz-de-Solorzano
2012	J	`jnl`	Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarray. BMC Bioinform. Victor Segura, Alejandro Toledo-Arana, Maite Uzqueda, Iñigo Lasa, Arrate Muñoz-Barrutia
2010	—	`conf`	Automatic leakage detection and recovery for airway tree extraction in chest CT images. ISBI Mario Ceresa, Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2010	J	`jnl`	Fast Space-Variant Elliptical Filtering Using Box Splines. IEEE Trans. Image Process. Kunal Narayan Chaudhury, Arrate Muñoz-Barrutia, Michael Unser
2010	—	`conf`	Fast detection of cells using a continuously scalable Mexican-hat-like template. ISBI Kunal Narayan Chaudhury, Zsuzsanna Püspöki, Arrate Muñoz-Barrutia, Daniel Sage, Michael Unser
2010	J	`jnl`	Fast space-variant elliptical filtering using box splines CoRR Kunal Narayan Chaudhury, Arrate Muñoz-Barrutia, Michael Unser
2010	J	`jnl`	Spatially Variant Convolution With Scaled B-Splines. IEEE Trans. Image Process. Arrate Muñoz-Barrutia, Xabier Artaechevarria, Carlos Ortiz-de-Solorzano
2009	—	`conf`	A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. SCIA Martin Maska, Ondrej Danek, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Michal Kozubek, Ignacio Fernández García
2009	J	`jnl`	Combination Strategies in Multi-Atlas Image Segmentation: Application to Brain MR Data. IEEE Trans. Medical Imaging Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2009	J	`jnl`	Fast adaptive elliptical filtering using box splines CoRR Kunal Narayan Chaudhury, Arrate Muñoz-Barrutia, Michael Unser
2009	—	`conf`	Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. SCIA Ondrej Danek, Pavel Matula, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Martin Maska, Michal Kozubek
2008	—	`conf`	Automation of the detection of lung cancer cells in minimal samples of bronchioalveolar lavage. ISBI Carlos Ortiz-de-Solorzano, Thomas Pengo, Miguel Galarraga, Arrate Muñoz-Barrutia
2008	B	`conf`	Efficient classifier generation and weighted voting for atlas-based segmentation: two small steps faster and closer to the combination oracle. Image Processing Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solórzano
2008	B	`conf`	Fast adaptive elliptical filtering using box splines. ICIP Kunal Narayan Chaudhury, Arrate Muñoz-Barrutia, Michael Unser
2007	—	`conf`	Restoration of Biomedical Images using Locally Adaptive B-Spline Smoothing. ICIP (2) Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2007	—	`conf`	Restoration of Micro-Ct Images Using Locally Adaptive B-Spline Smoothing. ISBI Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
2006	—	`conf`	Locally adaptive smoothing method based on B-splines. CompIMAGE G. Vidal-Cassanya, Arrate Muñoz-Barrutia, Michael Unser
2005	—	`—`	Nondyadic and nonlinear multiresolution image approximations. Arrate Muñoz-Barrutia