Arndt von Haeseler

39 papers Journal 32Unranked 6

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Learning From an Artificial Neural Network in Phylogenetics. IEEE ACM Trans. Comput. Biol. Bioinform. Alina F. Leuchtenberger, Arndt von Haeseler
2024	J	`jnl`	Neutral competition explains the clonal composition of neural organoids. PLoS Comput. Biol. Florian G. Pflug, Simon Haendeler, Christopher Esk, Dominik Lindenhofer, Juergen A. Knoblich, Arndt von Haeseler
2023	J	`jnl`	SVhound: detection of regions that harbor yet undetected structural variation. BMC Bioinform. Luis F. Paulin, Muthuswamy Raveendran, R. Alan Harris, Jeffrey Rogers, Arndt von Haeseler, Fritz J. Sedlazeck
2022	J	`jnl`	InspectorCell: Finding Ground Truth in Multiplexed Microscopy Images. J. Open Source Softw. Andre Gosselink, Tatsiana Hofer, Elvira Criado-Moronati, Arndt von Haeseler, Jutta Kollet
2019	J	`jnl`	Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets. BMC Bioinform. Tobias Neumann, Veronika A. Herzog, Matthias Muhar, Arndt von Haeseler, Johannes Zuber, Stefan L. Ameres, Philipp Rescheneder
2018	J	`jnl`	TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers. Bioinform. Florian G. Pflug, Arndt von Haeseler
2017	J	`jnl`	An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile. J. Comput. Biol. Celine Prakash, Arndt von Haeseler
2016	—	`conf`	A new phylogenetic tree sampling method for maximum parsimony bootstrapping and proof-of-concept implementation. KSE Diep Thi Hoang, Le Sy Vinh, Tomás Flouri, Alexandros Stamatakis, Arndt von Haeseler, Bui Quang Minh
2016	J	`jnl`	W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. Jana Trifinopoulos, Lam-Tung Nguyen, Arndt von Haeseler, Bui Quang Minh
2015	J	`jnl`	Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference. J. Comput. Biol. Olga Chernomor, Bui Quang Minh, Arndt von Haeseler
2013	J	`jnl`	NextGenMap: fast and accurate read mapping in highly polymorphic genomes. Bioinform. Fritz J. Sedlazeck, Philipp Rescheneder, Arndt von Haeseler
2012	—	`conf`	MASon: Million Alignments in Seconds - A Platform Independent Pairwise Sequence Alignment Library for next Generation Sequencing Data. BIOINFORMATICS Philipp Rescheneder, Arndt von Haeseler, Fritz J. Sedlazeck
2012	J	`jnl`	On the group theoretical background of assigning stepwise mutations onto phylogenies. Algorithms Mol. Biol. Mareike Fischer, Steffen Klaere, Minh Anh Nguyen, Arndt von Haeseler
2012	J	`jnl`	TreeSnatcher plus: capturing phylogenetic trees from images. BMC Bioinform. Thomas Laubach, Arndt von Haeseler, Martin J. Lercher
2010	—	`conf`	ACOPHY: A Simple and General Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction. ANTS Conference Huy Q. Dinh, Bui Quang Minh, Hoang Xuan Huan, Arndt von Haeseler
2010	J	`jnl`	Accuracy of phylogeny reconstruction methods combining overlapping gene data sets. Algorithms Mol. Biol. Anne Kupczok, Heiko A. Schmidt, Arndt von Haeseler
2010	J	`jnl`	FACT: Functional annotation transfer between proteins with similar feature architectures. BMC Bioinform. Tina Koestler, Arndt von Haeseler, Ingo Ebersberger
2009	J	`jnl`	Budgeted Phylogenetic Diversity on Circular Split Systems. IEEE ACM Trans. Comput. Biol. Bioinform. Bui Quang Minh, Fabio Pardi, Steffen Klaere, Arndt von Haeseler
2009	J	`jnl`	Comment on 'A congruence index for testing topological similarity between trees'. Bioinform. Anne Kupczok, Arndt von Haeseler
2008	J	`jnl`	An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees. J. Comput. Biol. Anne Kupczok, Arndt von Haeseler, Steffen Klaere
2008	—	`conf`	Knowledge Acquisition Focused Cooperative Development of Bio-ontologies - A Case Study with BIO2Me. BIRD Dominic Mainz, Ingo Paulsen, Indra Mainz, Katrin Weller, Jochen Kohl, Arndt von Haeseler
2007	J	`jnl`	TreeSnatcher: coding trees from images. Bioinform. Thomas Laubach, Arndt von Haeseler
2007	J	`jnl`	pIPHULA - parallel inference of population parameters using a likelihood approach. Bioinform. Heiko A. Schmidt, Arndt von Haeseler, Jutta Buschbom
2006	J	`jnl`	HvrBase++: a phylogenetic database for primate species. Nucleic Acids Res. Jochen Kohl, Ingo Paulsen, Thomas Laubach, Achim Radtke, Arndt von Haeseler
2006	J	`jnl`	INVHOGEN: a database of homologous invertebrate genes. Nucleic Acids Res. Ingo Paulsen, Arndt von Haeseler
2005	J	`jnl`	Shortest triplet clustering: reconstructing large phylogenies using representative sets. BMC Bioinform. Le Sy Vinh, Arndt von Haeseler
2005	J	`jnl`	pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies. Bioinform. Bui Quang Minh, Le Sy Vinh, Arndt von Haeseler, Heiko A. Schmidt
2004	—	`conf`	PhyNav: A Novel Approach to Reconstruct Large Phylogenies. GfKl Le Sy Vinh, Heiko A. Schmidt, Arndt von Haeseler
2003	J	`jnl`	Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. J. Parallel Distributed Comput. Heiko A. Schmidt, Ekkehard Petzold, Martin Vingron, Arndt von Haeseler
2002	J	`jnl`	TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinform. Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, Arndt von Haeseler
2000	—	`conf`	Can One Estimate Distances from Pairwise Sequence Alignments? German Conference on Bioinformatics Roland Fleißner, Dirk Metzler, Arndt von Haeseler
1999	J	`jnl`	C-->U editing of apolipoprotein B mRNA in marsupials: identification and characterisation of APOBEC-1 from the American opossum Monodelphus domestica. Nucleic Acids Res. T. Fujino, N. Navaratnam, A. Jarmuz, Arndt von Haeseler, James Scott
1999	J	`jnl`	HvrBase: compilation of mtDNA control region sequences from primates. Nucleic Acids Res. Florian Burckhardt, Arndt von Haeseler, Sonja Meyer
1998	J	`jnl`	Compilation of human mtDNA control region sequences. Nucleic Acids Res. Oliva Handt, Sonja Meyer, Arndt von Haeseler
1998	J	`jnl`	Evolution of DNA or Amino Acid Sequences with Dependent Sites. J. Comput. Biol. Arndt von Haeseler, M. Schoniger
1997	J	`jnl`	Towards Integration of Multiple Alignment and Phylogenetic Tree Construction. J. Comput. Biol. Martin Vingron, Arndt von Haeseler
1995	J	`jnl`	Modeling the Polymerase Chain Reaction. J. Comput. Biol. Gunter Weiss, Arndt von Haeseler
1995	J	`jnl`	Simulating efficiently the evolution of DNA sequences. Comput. Appl. Biosci. M. Schoniger, Arndt von Haeseler
1988	—	`—`	Rekonstruktion phylogenetischer Bäume mit Hilfe von Varianten der Vier-Punkt-Bedingung. Arndt von Haeseler