Arif Canakoglu

37 papers A 3B 1C 1Journal 15Unranked 14
YearRankTypeTitle / Venue / Authors
2023 — ed.
Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2022, Grenoble, France, September 19-23, 2022, Proceedings, Part I
PKDD/ECML Workshops (1)
Irena Koprinska, Paolo Mignone, Riccardo Guidotti, Szymon Jaroszewicz, Holger Fröning, Francesco Gullo, Pedro M. Ferreira, Damian Roqueiro, Gaia Ceddia, Slawomir Nowaczyk, João Gama, Rita P. Ribeiro, Ricard Gavaldà, Elio Masciari, Zbigniew W. Ras, Ettore Ritacco, Francesca Naretto, Andreas Theissler, Przemyslaw Biecek, Wouter Verbeke, Gregor Schiele, Franz Pernkopf, Michaela Blott, Ilaria Bordino, Ivan Luciano Danesi, Giovanni Ponti, Lorenzo Severini, Annalisa Appice, Giuseppina Andresini, Ibéria Medeiros, Guilherme Graça, Lee Cooper, Naghmeh Ghazaleh, Jonas Richiardi, Diego Saldana Miranda, Konstantinos Sechidis, Arif Canakoglu, Sara Pidò, Pietro Pinoli, Albert Bifet, Sepideh Pashami
2023 — ed.
Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2022, Grenoble, France, September 19-23, 2022, Proceedings, Part II
PKDD/ECML Workshops (2)
Irena Koprinska, Paolo Mignone, Riccardo Guidotti, Szymon Jaroszewicz, Holger Fröning, Francesco Gullo, Pedro M. Ferreira, Damian Roqueiro, Gaia Ceddia, Slawomir Nowaczyk, João Gama, Rita P. Ribeiro, Ricard Gavaldà, Elio Masciari, Zbigniew W. Ras, Ettore Ritacco, Francesca Naretto, Andreas Theissler, Przemyslaw Biecek, Wouter Verbeke, Gregor Schiele, Franz Pernkopf, Michaela Blott, Ilaria Bordino, Ivan Luciano Danesi, Giovanni Ponti, Lorenzo Severini, Annalisa Appice, Giuseppina Andresini, Ibéria Medeiros, Guilherme Graça, Lee Cooper, Naghmeh Ghazaleh, Jonas Richiardi, Diego Saldana Miranda, Konstantinos Sechidis, Arif Canakoglu, Sara Pidò, Pietro Pinoli, Albert Bifet, Sepideh Pashami
2023 J jnl
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants.
Database J. Biol. Databases Curation
Pietro Pinoli, Arif Canakoglu, Stefano Ceri, Matteo Chiara, Erika Ferrandi, Luca Minotti, Anna Bernasconi
2022 J jnl
GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis.
ACM Trans. Comput. Heal.
Pietro Crovari, Sara Pidò, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Franca Garzotto, Stefano Ceri
2022 J jnl
Genomic data integration and user-defined sample-set extraction for population variant analysis.
BMC Bioinform.
Tommaso Alfonsi, Anna Bernasconi, Arif Canakoglu, Marco Masseroli
2022 J jnl
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Francisco Cristovao, Silvia Cascianelli, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli
2022 J jnl
META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration.
IEEE ACM Trans. Comput. Biol. Bioinform.
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri
2022 J jnl
ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time.
Bioinform.
Luca Cilibrasi, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Matteo Chiara, Stefano Ceri
2021 J jnl
A review on viral data sources and search systems for perspective mitigation of COVID-19.
Briefings Bioinform.
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Pietro Pinoli, Stefano Ceri
2021 — conf
Ensemble Feature Selection for Single Cell Chromatin Conformation Analysis.
ICBBT
Amirreza Rouhi, Luca Nanni, Arif Canakoglu, Pietro Pinoli, Stefano Ceri
2021 J jnl
EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species.
Database J. Biol. Databases Curation
Anna Bernasconi, Luca Cilibrasi, Ruba Al Khalaf, Tommaso Alfonsi, Stefano Ceri, Pietro Pinoli, Arif Canakoglu
2021 J jnl
Federated sharing and processing of genomic datasets for tertiary data analysis.
Briefings Bioinform.
Arif Canakoglu, Pietro Pinoli, Andrea Gulino, Luca Nanni, Marco Masseroli, Stefano Ceri
2021 J jnl
The road towards data integration in human genomics: players, steps and interactions.
Briefings Bioinform.
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri
2021 J jnl
ViruSurf: an integrated database to investigate viral sequences.
Nucleic Acids Res.
Arif Canakoglu, Pietro Pinoli, Anna Bernasconi, Tommaso Alfonsi, Damianos P. Melidis, Stefano Ceri
2020 — conf
Automated Integration of Genomic Metadata with Sequence-to-Sequence Models.
ECML/PKDD (5)
Giuseppe Cannizzaro, Michele Leone, Anna Bernasconi, Arif Canakoglu, Mark J. Carman
2020 A conf
Empowering Virus Sequence Research Through Conceptual Modeling.
ER
Anna Bernasconi, Arif Canakoglu, Pietro Pinoli, Stefano Ceri
2020 B conf
Performance Prediction for Data-driven Workflows on Apache Spark.
MASCOTS
Andrea Gulino, Arif Canakoglu, Stefano Ceri, Danilo Ardagna
2019 — conf
Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types.
BIBM
Andrea Gulino, Eirini Stamoulakatou, Arif Canakoglu, Pietro Pinoli
2019 — conf
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping.
CIBB
Silvia Cascianelli, Francisco Cristovao, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli
2019 — conf
Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study.
ER Workshops
Anna Bernasconi, Arif Canakoglu, Stefano Ceri
2019 A conf
From a Conceptual Model to a Knowledge Graph for Genomic Datasets.
ER
Anna Bernasconi, Arif Canakoglu, Stefano Ceri
2019 J jnl
GenoSurf: metadata driven semantic search system for integrated genomic datasets.
Database J. Biol. Databases Curation
Arif Canakoglu, Anna Bernasconi, Andrea Colombo, Marco Masseroli, Stefano Ceri
2019 J jnl
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data.
Bioinform.
Marco Masseroli, Arif Canakoglu, Pietro Pinoli, Abdulrahman Kaitoua, Andrea Gulino, Olha Horlova, Luca Nanni, Anna Bernasconi, Stefano Perna, Eirini Stamoulakatou, Stefano Ceri
2019 J jnl
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets.
BMC Bioinform.
Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri
2018 A conf
Demonstration of GenoMetric Query Language.
CIKM
Stefano Ceri, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
2018 — conf
Designing and Evaluating Deep Learning Models for Cancer Detection on Gene Expression Data.
CIBB
Arif Canakoglu, Luca Nanni, Artur Sokolovsky, Stefano Ceri
2018 — conf
Exploiting Ladder Networks for Gene Expression Classification.
IWBBIO (1)
Guray Golcuk, Mustafa Anil Tuncel, Arif Canakoglu
2018 — conf
Exploring Genomic Datasets: from Batch to Interactive and Back.
ExploreDB@SIGMOD/PODS
Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri
2018 — conf
Ontology-driven metadata enrichment for genomic datasets.
SWAT4LS
Anna Bernasconi, Arif Canakoglu, Andrea Colombo, Stefano Ceri
2017 — conf
Data-Driven Genomic Computing: Making sense of Signals from the Genome.
DAMDID/RCDL
Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
2017 — conf
Experiences in the Development of a Data Management System for Genomics.
DATA (Revised Selected Papers)
Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
2017 — conf
Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome.
DAMDID/RCDL (Selected Papers)
Stefano Ceri, Anna Bernasconi, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
2016 — conf
Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge.
IWBBIO
Arif Canakoglu, Stefano Ceri, Marco Masseroli
2016 J jnl
Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Marco Masseroli, Arif Canakoglu, Stefano Ceri
2016 — —
Modular schema based data warehousing of evolving, redundant and incomplete data: application to biomolecular knowledge data integration and inference.
Arif Canakoglu
2013 C conf
Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery.
BIBE
Arif Canakoglu, Marco Masseroli, Stefano Ceri, Luca Tettamanti, Giorgio Ghisalberti, Alessandro Campi
2011 — conf
Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery.
CIBB
Arif Canakoglu, Giorgio Ghisalberti, Marco Masseroli