Arend Sidow

11 papers B 2C 1Journal 8
YearRankTypeTitle / Venue / Authors
2021 J jnl
De novo mutational signature discovery in tumor genomes using SparseSignatures.
PLoS Comput. Biol.
Avantika Lal, Keli Liu, Robert Tibshirani, Arend Sidow, Daniele Ramazzotti
2015 B conf
Read Clouds Uncover Variation in Complex Regions of the Human Genome.
RECOMB
Alex Bishara, Yuling Liu, Dorna Kashef Haghighi, Ziming Weng, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou
2015 J jnl
svviz: a read viewer for validating structural variants.
Bioinform.
Noah Spies, Justin M. Zook, Marc Salit, Arend Sidow
2013 J jnl
Clustering reveals ubiquitous heterogeneity and asymmetry of genomic signals at functional elements.
Tiny Trans. Comput. Sci.
Anshul Kundaje, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Cheryl L. Smith, Debasish Raha, Elliott E. Winters, Steven M. Johnson, Michael P. Snyder, Serafim Batzoglou, Arend Sidow
2013 B conf
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery.
RECOMB
Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou
2013 J jnl
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery.
J. Comput. Biol.
Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou
2010 J jnl
Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++.
PLoS Comput. Biol.
Eugene Davydov, David L. Goode, Marina Sirota, Gregory M. Cooper, Arend Sidow, Serafim Batzoglou
2009 J jnl
SHRiMP: Accurate Mapping of Short Color-space Reads.
PLoS Comput. Biol.
Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno
2007 J jnl
Constructing a meaningful evolutionary average at the phylogenetic center of mass.
BMC Bioinform.
Eric A. Stone, Arend Sidow
2004 J jnl
ABC: software for interactive browsing of genomic multiple sequence alignment data.
BMC Bioinform.
Gregory M. Cooper, Senthil A. G. Singaravelu, Arend Sidow
2004 C conf
Chaining Algorithms for Alignment of Draft Sequence.
WABI
Mukund Sundararajan, Michael Brudno, Kerrin S. Small, Arend Sidow, Serafim Batzoglou