Anuradha Wickramarachchi

18 papers C 2Journal 10Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
AskBeacon - performing genomic data exchange and analytics with natural language.
Bioinform.
Anuradha Wickramarachchi, Shakila Tonni, Sonali Majumdar, Sarvnaz Karimi, Sulev Kõks, Brendan Hosking, Jordi Rambla, Natalie A. Twine, Yatish Jain, Denis C. Bauer
2025 J jnl
GraphBin-Tk: assembly graph-based metagenomic binning toolkit.
J. Open Source Softw.
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Robert McArthur, Yapeng Lang, Katherine Caley, Gavin A. Huttley
2024 J jnl
AskBeacon - Performing genomic data exchange and analytics with natural language.
CoRR
Anuradha Wickramarachchi, Shakila Tonni, Sonali Majumdar, Sarvnaz Karimi, Sulev Kõks, Brendan Hosking, Jordi Rambla, Natalie A. Twine, Yatish Jain, Denis C. Bauer
2024 J jnl
Solving genomic puzzles: computational methods for metagenomic binning.
Briefings Bioinform.
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards
2022 J jnl
Binning long reads in metagenomics datasets using composition and coverage information.
Algorithms Mol. Biol.
Anuradha Wickramarachchi, Yu Lin
2022 J jnl
GraphPlas: Refined Classification of Plasmid Sequences Using Assembly Graphs.
IEEE ACM Trans. Comput. Biol. Bioinform.
Anuradha Wickramarachchi, Yu Lin
2022 — conf
Metagenomics Binning of Long Reads Using Read-Overlap Graphs.
RECOMB-CG
Anuradha Wickramarachchi, Yu Lin
2021 J jnl
Improving metagenomic binning results with overlapped bins using assembly graphs.
Algorithms Mol. Biol.
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
2021 C conf
LRBinner: Binning Long Reads in Metagenomics Datasets.
WABI
Anuradha Wickramarachchi, Yu Lin
2020 C conf
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs.
WABI
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
2020 J jnl
GraphBin: refined binning of metagenomic contigs using assembly graphs.
Bioinform.
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
2020 J jnl
MetaBCC-LR: metagenomics binning by coverage and composition for long reads.
Bioinform.
Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, Yu Lin
2020 — conf
MetaG: a comprehensive visualization tool to explore metagenomes.
BIBM
Kalana Wijegunarathna, Uditha Maduranga, Sadeep Weerasinghe, Indika Perera, Anuradha Wickramarachchi
2020 J jnl
Phylogenetic Tree Construction Using K-Mer Forest- Based Distance Calculation.
Int. J. Online Biomed. Eng.
Gihan Gamage, Nadeeshan Gimhana, Indika Perera, Shanaka Bandara, Thilina Pathirana, Anuradha Wickramarachchi, Vijini Mallawaarachchi
2020 — conf
Resource Aware Task Clustering for Scientific Workflow Execution in High Performance Computing Environments.
HPCC/DSS/SmartCity
Ayesh Weerasinghe, Kalana Wijethunga, Randika Jayasekara, Indika Perera, Anuradha Wickramarachchi
2018 — conf
Efficient Bioinformatics Computations through GPU Accelerated Web Services.
ICACS
Vijini Mallawaarachchi, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya
2018 — conf
Enhanced Student Learning in Proteomics - an Interactive Tool Support for Teaching Workflows.
TALE
Anuradha Wickramarachchi, Vijini Mallawaarachchi, Dulani Meedeniya, Indika Perera, Anuradha Welivita
2018 — conf
Use of nomadic computing devices for storage synchronization.
ICOIN
Anuradha Wickramarachchi, Dulaj Atapattu, Pamoda Wimalasiri, Ravidu Mallawa Arachchi, Gihan Dias