Antonio Mucherino

92 papers A 2B 1C 24Misc 2Journal 36Unranked 22
YearRankTypeTitle / Venue / Authors
2025 C conf
Adiabatic Quantum Computing for the Subset Sum Problem: Preliminary Studies.
FedCSIS
Cesar Freitas Bernardes, Pedro B. Castellucci, Douglas Soares Gonçalves, Eduardo Inacio Duzzioni, Antonio Mucherino
2025 — conf
The Stick Model for Distance Geometry.
GSI (1)
Antonio Mucherino
2024 J jnl
An impossible combinatorial counting method in distance geometry.
Discret. Appl. Math.
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
2024 C conf
Impact of Local Geometry on Methods for Constructing Protein Conformations.
FedCSIS
Wagner Rocha, Therese E. Malliavin, Antonio Mucherino, Leo Liberti
2024 J jnl
Influence of Stereochemistry in a Local Approach for Calculating Protein Conformations.
J. Chem. Inf. Model.
Wagner Rocha, Leo Liberti, Antonio Mucherino, Thérèse E. Malliavin
2023 A conf
The Coherent Multi-representation Problem for Protein Structure Determination.
DIS
Antonio Mucherino, Jung-Hsin Lin
2023 — conf
The Coherent Multi-representation Problem with Applications in Structural Biology.
IWBBIO (1)
Antonio Mucherino
2023 — conf
Variable Neighborhood Search in Hamming Space.
LSSC
Simon B. Hengeveld, Antonio Mucherino
2022 — conf
A Distance Geometry Procedure Using the Levenberg-Marquardt Algorithm and with Applications in Biology but Not only.
IWBBIO (2)
Douglas Soares Gonçalves, Antonio Mucherino
2022 C conf
A GPU approach to distance geometry in 1D: an implementation in C/CUDA.
FedCSIS
Simon B. Hengeveld, Antonio Mucherino
2022 C conf
On the Feasible Regions Delimiting Natural Human Postures in a Novel Skeletal Representation.
FedCSIS
Simon B. Hengeveld, Antonio Mucherino
2022 J jnl
Preface: special issue on optimization in distance geometry.
J. Glob. Optim.
Andrés D. Báez-Sánchez, Carlile Lavor, Antonio Mucherino
2021 — conf
A Linear Program for Points of Interest Relocation in Adaptive Maps.
GSI (2)
Simon B. Hengeveld, F. Plastria, Antonio Mucherino, David A. Pelta
2021 — conf
A study on the impact of the distance types involved in protein structure determination by NMR.
BIBM
Simon B. Hengeveld, Therese E. Malliavin, J. H. Lin, Leo Liberti, Antonio Mucherino
2021 J jnl
An impossible utopia in distance geometry.
CoRR
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
2021 J jnl
Improving the sampling process in the interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem.
Appl. Math. Comput.
Carlile Lavor, Michael Souza, Luiz Mariano Carvalho, Douglas Soares Gonçalves, Antonio Mucherino
2021 C conf
On the Representation of Human Motions and Distance-based Retargeting.
FedCSIS
Simon B. Hengeveld, Antonio Mucherino
2021 J jnl
Solving the One-dimensional Distance Geometry Problem by Optical Computing.
CoRR
Simon B. Hengeveld, N. Rubiano da Silva, Douglas Soares Gonçalves, Paulo H. Souto Ribeiro, Antonio Mucherino
2021 J jnl
The Referenced Vertex Ordering Problem: Theory, Applications, and Solution Methods.
Open J. Math. Optim.
Jérémy Omer, Antonio Mucherino
2021 — conf
binMeta: A New Java Package for Meta-heuristic Searches.
LSSC
Antonio Mucherino
2020 — conf
An Analysis on the Degrees of Freedom of Binary Representations for Solutions to Discretizable Distance Geometry Problems.
WCO@FedCSIS
Antonio Mucherino
2020 J jnl
An application-based characterization of dynamical distance geometry problems.
Optim. Lett.
Antonio Mucherino, Jérémy Omer, Ludovic Hoyet, Paolo Robuffo Giordano, Franck Multon
2020 C conf
MD-jeep: a New Release for Discretizable Distance Geometry Problems with Interval Data.
FedCSIS
Antonio Mucherino, Douglas Soares Gonçalves, Leo Liberti, Jung-Hsin Lin, Carlile Lavor, Nelson Maculan
2020 J jnl
Preface: Special issue on distances in optimization and graphs dedicated to the memory of Michel Deza.
Optim. Lett.
Antonio Mucherino, Carlile Lavor
2020 J jnl
The K-discretization and K-incident graphs for discretizable Distance Geometry.
Optim. Lett.
Germano Abud, Jorge Alencar, Carlile Lavor, Leo Liberti, Antonio Mucherino
2019 — conf
A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data.
IWBBIO (1)
Antonio Mucherino, Jung-Hsin Lin, Douglas Soares Gonçalves
2019 C conf
An Efficient Exhaustive Search for the Discretizable Distance Geometry Problem with Interval Data.
FedCSIS
Antonio Mucherino, Jung-Hsin Lin
2019 C conf
DSPP: Deep Shape and Pose Priors of Humans.
MIG
Shanfeng Hu, Hubert P. H. Shum, Antonio Mucherino
2019 J jnl
Systematic Exploration of Protein Conformational Space Using a Distance Geometry Approach.
J. Chem. Inf. Model.
Thérèse E. Malliavin, Antonio Mucherino, Carlile Lavor, Leo Liberti
2018 J jnl
A symmetry-based splitting strategy for discretizable distance geometry problems.
J. Glob. Optim.
Felipe Fidalgo, Douglas Soares Gonçalves, Carlile Lavor, Leo Liberti, Antonio Mucherino
2018 C conf
Feature Selection in Time-Series Motion Databases.
FedCSIS
Antonio Mucherino, Florian Elain, Ludovic Hoyet, Richard Kulpa
2018 — book
On the Discretization of Distance Geometry: Theory, Algorithms and Applications.
Antonio Mucherino
2018 J jnl
Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures.
Ann. Oper. Res.
Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino
2018 C conf
Surface based motion retargeting by preserving spatial relationship.
MIG
Zhiguang Liu, Antonio Mucherino, Ludovic Hoyet, Franck Multon
2017 C conf
A Distance-Based Approach for Human Posture Simulations.
FedCSIS
Antonio Mucherino, Douglas Soares Gonçalves, Antonin Bernardin, Ludovic Hoyet, Franck Multon
2017 — conf
An Approach to Dynamical Distance Geometry.
GSI
Antonio Mucherino, Douglas Soares Gonçalves
2017 C conf
Normalized Euclidean distance matrices for human motion retargeting.
MIG
Antonin Bernardin, Ludovic Hoyet, Antonio Mucherino, Douglas Soares Gonçalves, Franck Multon
2017 J jnl
Recent advances on the interval distance geometry problem.
J. Glob. Optim.
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor, Leo Liberti
2016 C conf
A New Approach to the Discretization of Multidimensional Scaling.
FedCSIS
Antonio Mucherino, Warley Gramacho, Jung-Hsin Lin, Carlile Lavor
2016 J jnl
Assigned and unassigned distance geometry: applications to biological molecules and nanostructures.
4OR
Simon J. L. Billinge, Phillip M. Duxbury, Douglas Soares Gonçalves, Carlile Lavor, Antonio Mucherino
2016 Misc conf
InterCriteria Analysis of Ant Algorithm with Environment Change for GPS Surveying Problem.
AIMSA
Stefka Fidanova, Olympia Roeva, Antonio Mucherino, Kristina G. Kapanova
2016 J jnl
Optimal partial discretization orders for discretizable distance geometry.
Int. Trans. Oper. Res.
Douglas Soares Gonçalves, Antonio Mucherino
2015 — conf
A Pseudo de Bruijn Graph Representation for Discretization Orders for Distance Geometry.
IWBBIO (1)
Antonio Mucherino
2015 J jnl
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints.
BMC Bioinform.
Andrea Cassioli, Benjamin Bardiaux, Guillaume Bouvier, Antonio Mucherino, Rafael Alves, Leo Liberti, Michael Nilges, Carlile Lavor, Thérèse E. Malliavin
2015 C conf
Ant Colony Optimization with environment changes: An application to GPS surveying.
FedCSIS
Antonio Mucherino, Stefka Fidanova, Maria Ganzha
2015 — conf
Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint.
LSSC
Antonio Mucherino
2015 J jnl
Preface.
Discret. Appl. Math.
Antonio Mucherino, Rosiane de Freitas Rodrigues, Carlile Lavor
2014 C conf
An adaptive branching scheme for the Branch & Prune algorithm applied to Distance Geometry.
FedCSIS
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor
2014 J jnl
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex.
Trans. Comput. Sci.
Jeongyeon Seo, Jae-Kwan Kim, Joonghyun Ryu, Carlile Lavor, Antonio Mucherino, Deok-Soo Kim
2014 J jnl
Discretization orders and efficient computation of cartesian coordinates for distance geometry.
Optim. Lett.
Douglas Soares Gonçalves, Antonio Mucherino
2014 J jnl
Discretization orders for protein side chains.
J. Glob. Optim.
Virginia Costa, Antonio Mucherino, Carlile Lavor, Andrea Cassioli, Luiz Mariano Carvalho, Nelson Maculan
2014 J jnl
Euclidean Distance Geometry and Applications.
SIAM Rev.
Leo Liberti, Carlile Lavor, Nelson Maculan, Antonio Mucherino
2014 J jnl
On the number of realizations of certain Henneberg graphs arising in protein conformation.
Discret. Appl. Math.
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
2013 — ch.
A VNS-Based Heuristic for Feature Selection in Data Mining.
Hybrid Metaheuristics
Antonio Mucherino, Leo Liberti
2013 — ch.
Distance Geometry in Structural Biology: New Perspectives.
Distance Geometry
Thérèse E. Malliavin, Antonio Mucherino, Michael Nilges
2013 — book
Distance Geometry: Theory, Methods, and Applications
Distance Geometry
Antonio Mucherino, Carlile Lavor, Leo Liberti, Nelson Maculan
2013 C conf
Energy-based Pruning Devices for the BP Algorithm applied to Distance Geometry.
FedCSIS
Douglas Soares Gonçalves, Antonio Mucherino, Carlile Lavor
2013 — conf
On the Identification of Discretization Orders for Distance Geometry with Intervals.
GSI
Antonio Mucherino
2013 — ch.
The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins.
Distance Geometry
Leo Liberti, Carlile Lavor, Antonio Mucherino
2013 — conf
The integration of Clifford Algebra in the iBP algorithm for the DMDGP.
IWBBIO
Rafael Alves, Andrea Cassioli, Antonio Mucherino, Carlile Lavor, Leo Liberti
2013 J jnl
The interval Branch-and-Prune algorithm for the discretizable molecular distance geometry problem with inexact distances.
J. Glob. Optim.
Carlile Lavor, Leo Liberti, Antonio Mucherino
2012 — conf
A Parallel BP Algorithm for the Discretizable Distance Geometry Problem.
IPDPS Workshops
Warley Gramacho, Antonio Mucherino, Carlile Lavor, Nelson Maculan
2012 J jnl
Discretization orders for distance geometry problems.
Optim. Lett.
Carlile Lavor, Jon Lee, Audrey Lee-St. John, Leo Liberti, Antonio Mucherino, Maxim Sviridenko
2012 J jnl
Exploiting Symmetry Properties of the Discretizable molecular Distance Geometry Problem.
J. Bioinform. Comput. Biol.
Antonio Mucherino, Carlile Lavor, Leo Liberti
2012 C conf
On suitable orders for discretizing Molecular Distance Geometry Problems related to protein side chains.
FedCSIS
Virginia Costa, Antonio Mucherino, Carlile Lavor, Luiz Mariano Carvalho, Nelson Maculan
2012 J jnl
Recent advances on the Discretizable Molecular Distance Geometry Problem.
Eur. J. Oper. Res.
Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino
2012 J jnl
The discretizable distance geometry problem.
Optim. Lett.
Antonio Mucherino, Carlile Lavor, Leo Liberti
2012 J jnl
The discretizable molecular distance geometry problem.
Comput. Optim. Appl.
Carlile Lavor, Leo Liberti, Nelson Maculan, Antonio Mucherino
2011 — conf
A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem.
BIBM Workshops
Antonio Mucherino, Carlile Lavor, Leo Liberti
2011 C conf
Branch-and-Prune trees with bounded width.
CTW
Leo Liberti, Benoît Masson, Carlile Lavor, Antonio Mucherino
2011 C conf
Extending the definition of beta-consistent biclustering for feature selection.
FedCSIS
Antonio Mucherino
2011 B conf
Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems.
SEA
Antonio Mucherino, Carlile Lavor, Therese E. Malliavin, Leo Liberti, Michael Nilges, Nelson Maculan
2011 J jnl
Molecular distance geometry methods: from continuous to discrete.
Int. Trans. Oper. Res.
Leo Liberti, Carlile Lavor, Antonio Mucherino, Nelson Maculan
2011 C conf
On the Number of Solutions of the Discretizable Molecular Distance Geometry Problem.
COCOA
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
2011 J jnl
On the computation of protein backbones by using artificial backbones of hydrogens.
J. Glob. Optim.
Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan
2011 J jnl
Polynomial cases of the Discretizable Molecular Distance Geometry Problem
CoRR
Leo Liberti, Carlile Lavor, Benoît Masson, Antonio Mucherino
2011 — conf
Recent Developments in Data Mining and Agriculture.
ICDM (Workshops)
Antonio Mucherino, Georg Ruß
2011 C conf
Sparsifying Distance Matrices for Protein-Protein Structure Alignments.
CTW
Antonio Mucherino, Inken Wohlers, Gunnar W. Klau, Rumen Andonov
2011 — conf
Variable Neighborhood Search for Robust Optimization and Applications to Aerodynamics.
LSSC
Antonio Mucherino, Martin Fuchs, Xavier Vasseur, Serge Gratton
2010 J jnl
A New Heuristic for Feature Selection by Consistent Biclustering
CoRR
Antonio Mucherino, Sonia Cafieri
2010 C conf
A parallel version of the Branch & Prune algorithm for the Molecular Distance Geometry Problem.
AICCSA
Antonio Mucherino, Carlile Lavor, Leo Liberti, El-Ghazali Talbi
2010 — conf
Consistent Biclustering and Applications to Agriculture.
ICDM (Workshops)
Antonio Mucherino, Alejandra Urtubia
2010 — conf
MD-jeep: An Implementation of a Branch and Prune Algorithm for Distance Geometry Problems.
ICMS
Antonio Mucherino, Leo Liberti, Carlile Lavor
2010 J jnl
On the number of solutions of the discretizable molecular distance geometry problem
CoRR
Leo Liberti, Benoît Masson, Jon Lee, Carlile Lavor, Antonio Mucherino
2010 — conf
On the solution of molecular distance geometry problems with interval data.
BIBM Workshops
Carlile Lavor, Leo Liberti, Antonio Mucherino
2009 J jnl
A survey of data mining techniques applied to agriculture.
Oper. Res.
Antonio Mucherino, Petraq Papajorgji, Panos M. Pardalos
2009 A conf
Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem.
GECCO
Antonio Mucherino, Leo Liberti, Carlile Lavor, Nelson Maculan
2009 — conf
Computing artificial backbones of hydrogen atoms in order to discover protein backbones.
IMCSIT
Carlile Lavor, Antonio Mucherino, Leo Liberti, Nelson Maculan
2009 Misc conf
On a discretizable subclass of instances of the molecular distance geometry problem.
SAC
Carlile Lavor, Leo Liberti, Antonio Mucherino, Nelson Maculan
2009 C ed.
Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, CTW 2009, Paris, France, June 2-4 2009
CTW
Sonia Cafieri, Antonio Mucherino, Giacomo Nannicini, Fabien Tarissan, Leo Liberti
2009 C conf
The Molecular Distance Geometry Problem Applied to Protein Conformations.
CTW
Antonio Mucherino, Carlile Lavor, Nelson Maculan
2008 J jnl
Understanding the role of the topology in protein folding by computational inverse folding experiments.
Comput. Biol. Chem.
Antonio Mucherino, Susan Costantini, Daniela di Serafino, Marco D'Apuzzo, Angelo M. Facchiano, Giovanni Colonna