Antonio Jimeno-Yepes

148 papers A* 1A 1B 5C 2Misc 12Journal 58Unranked 52

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Corrections to "Multi-Label Generalized Zero Shot Chest X-Ray Classification By Combining Image-Text Information With Feature Disentanglement". IEEE Trans. Medical Imaging Dwarikanath Mahapatra, Antonio Jimeno-Yepes, Behzad Bozorgtabar, Sudipta Roy, Zongyuan Ge, Mauricio Reyes
2025	J	`jnl`	Evolutionary thoughts: integration of large language models and evolutionary algorithms. CoRR Antonio Jimeno-Yepes, Pieter Barnard
2025	J	`jnl`	Multi-Label Generalized Zero Shot Chest X-Ray Classification by Combining Image-Text Information With Feature Disentanglement. IEEE Trans. Medical Imaging Dwarikanath Mahapatra, Antonio Jimeno-Yepes, Behzad Bozorgtabar, Sudipta Roy, Zongyuan Ge, Mauricio Reyes
2025	J	`jnl`	SCORE: A Semantic Evaluation Framework for Generative Document Parsing. CoRR Renyu Li, Antonio Jimeno-Yepes, Yao You, Kamil Plucinski, Maximilian Operlejn, Crag Wolfe
2024	—	`conf`	Boosting Patient Representation Learning via Graph Contrastive Learning. ECML/PKDD (9) Zhenhao Zhang, Yuxi Liu, Jiang Bian, Antonio Jimeno-Yepes, Jun Shen, Fuyi Li, Guodong Long, Flora D. Salim
2024	J	`jnl`	Financial Report Chunking for Effective Retrieval Augmented Generation. CoRR Antonio Jimeno-Yepes, Yao You, Jan Milczek, Sebastian Laverde, Renyu Li
2024	—	`conf`	Findings of the WMT 2024 Biomedical Translation Shared Task: Test Sets on Abstract Level. WMT Mariana L. Neves, Cristian Grozea, Philippe Thomas, Roland Roller, Rachel Bawden, Aurélie Névéol, Steffen Castle, Vanessa Bonato, Giorgio Maria Di Nunzio, Federica Vezzani, Maika Vicente Navarro, Lana Yeganova, Antonio Jimeno-Yepes
2024	—	`conf`	Fine-grained Patient Similarity Measuring using Contrastive Graph Similarity Networks. ICHI Yuxi Liu, Zhenhao Zhang, Shaowen Qin, Flora D. Salim, Jiang Bian, Antonio Jimeno-Yepes
2024	—	`conf`	Hypergraph Convolutional Networks for Fine-Grained lCU Patient Similarity Analysis and Risk Prediction. ICHI Yuxi Liu, Zhenhao Zhang, Shaowen Qin, Flora D. Salim, Antonio Jimeno-Yepes, Jun Shen, Jiang Bian
2023	—	`conf`	Contrastive Learning-Based Imputation-Prediction Networks for In-hospital Mortality Risk Modeling Using EHRs. ECML/PKDD (6) Yuxi Liu, Zhenhao Zhang, Shaowen Qin, Flora D. Salim, Antonio Jimeno-Yepes
2023	J	`jnl`	Contrastive Learning-based Imputation-Prediction Networks for In-hospital Mortality Risk Modeling using EHRs. CoRR Yuxi Liu, Zhenhao Zhang, Shaowen Qin, Flora D. Salim, Antonio Jimeno-Yepes
2023	—	`conf`	Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System. WMT Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Cristian Grozea
2023	J	`jnl`	Hypergraph Convolutional Networks for Fine-grained ICU Patient Similarity Analysis and Risk Prediction. CoRR Yuxi Liu, Zhenhao Zhang, Shaowen Qin, Flora D. Salim, Antonio Jimeno-Yepes, Jun Shen
2023	B	`conf`	Stacked Attention-based Networks for Accurate and Interpretable Health Risk Prediction. IJCNN Yuxi Liu, Zhenhao Zhang, Campbell Thompson, Richard Leibbrandt, Shaowen Qin, Antonio Jimeno-Yepes
2022	—	`conf`	Distinguishing between focus and background entities in biomedical corpora using discourse structure and transformers. LOUHI@EMNLP Antonio Jimeno-Yepes, Karin Verspoor
2022	—	`conf`	Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports. WMT Mariana Neves, Antonio Jimeno-Yepes, Amy Siu, Roland Roller, Philippe Thomas, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Giorgio Maria Di Nunzio, Federica Vezzani, Christel Gérardin, Rachel Bawden, Darryl Estrada, Salvador Lima-López, Eulàlia Farré-Maduell, Martin Krallinger, Cristian Grozea, Aurélie Névéol
2022	J	`jnl`	Hyperplane bounds for neural feature mappings. CoRR Antonio Jimeno-Yepes
2022	—	`conf`	Integrated Convolutional and Recurrent Neural Networks for Health Risk Prediction using Patient Journey Data with Many Missing Values. BIBM Yuxi Liu, Shaowen Qin, Antonio Jimeno-Yepes, Wei Shao, Zhenhao Zhang, Flora D. Salim
2022	J	`jnl`	Integrated Convolutional and Recurrent Neural Networks for Health Risk Prediction using Patient Journey Data with Many Missing Values. CoRR Yuxi Liu, Shaowen Qin, Antonio Jimeno-Yepes, Wei Shao, Zhenhao Zhang, Flora D. Salim
2022	—	`conf`	M3: Multi-level dataset for Multi-document summarisation of Medical studies. EMNLP (Findings) Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Antonio Jimeno-Yepes, Jey Han Lau
2022	J	`jnl`	Modeling Long-term Dependencies and Short-term Correlations in Patient Journey Data with Temporal Attention Networks for Health Prediction. CoRR Yuxi Liu, Zhenhao Zhang, Antonio Jimeno-Yepes, Flora D. Salim
2022	—	`conf`	Modeling long-term dependencies and short-term correlations in patient journey data with temporal attention networks for health prediction. BCB Yuxi Liu, Zhenhao Zhang, Antonio Jimeno-Yepes, Flora D. Salim
2022	J	`jnl`	Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. Database J. Biol. Databases Curation Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Senja Pollak, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Saipradeep Vg, Zhiyong Lu
2022	J	`jnl`	Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. CoRR Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj Dogan, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Zhiyong Lu
2022	—	`ed.`	Proceedings of the 13th International Workshop on Health Text Mining and Information Analysis, LOUHI@EMNLP 2022, Abu Dhabi, United Arab Emirates (Hybrid), December 7, 2022 LOUHI@EMNLP Alberto Lavelli, Eben Holderness, Antonio Jimeno-Yepes, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi
2022	—	`ed.`	Proceedings of the Seventh Conference on Machine Translation, WMT 2022, Abu Dhabi, United Arab Emirates (Hybrid), December 7-8, 2022 WMT Philipp Koehn, Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Markus Freitag, Yvette Graham, Roman Grundkiewicz, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Tom Kocmi, André F. T. Martins, Makoto Morishita, Christof Monz, Masaaki Nagata, Toshiaki Nakazawa, Matteo Negri, Aurélie Névéol, Mariana Neves, Martin Popel, Marco Turchi, Marcos Zampieri
2022	—	`conf`	READ-BioMed@SocialDisNER: Adaptation of an Annotation System to Spanish Tweets. SMM4H@COLING Antonio Jimeno-Yepes, Karin Verspoor
2022	—	`conf`	The READ-BioMed Team in LivingNER Task 1 (2022): Adaptation of an English Annotation System to Spanish. IberLEF@SEPLN Antonio Jimeno-Yepes, Karin Verspoor
2021	J	`jnl`	A representation model for biological entities by fusing structured axioms with unstructured texts. Bioinform. Peiliang Lou, Yuxin Dong, Antonio Jimeno-Yepes, Chen Li
2021	—	`conf`	Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research. ECIR (2) Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martínez
2021	—	`conf`	Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set. WMT@EMNLP Lana Yeganova, Dina Wiemann, Mariana L. Neves, Federica Vezzani, Amy Siu, Inigo Jauregi Unanue, Maite Oronoz, Nancy Mah, Aurélie Névéol, David Martínez, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Cristian Grozea, Olatz Perez-de-Viñaspre, Maika Vicente Navarro, Antonio Jimeno-Yepes
2021	—	`conf`	Grey-box Adversarial Attack And Defence For Sentiment Classification. NAACL-HLT Ying Xu, Xu Zhong, Antonio Jimeno-Yepes, Jey Han Lau
2021	J	`jnl`	Grey-box Adversarial Attack And Defence For Sentiment Classification. CoRR Ying Xu, Xu Zhong, Antonio Jimeno-Yepes, Jey Han Lau
2021	—	`conf`	ICDAR 2021 Competition on Scientific Literature Parsing. ICDAR (4) Antonio Jimeno-Yepes, Peter Zhong, Douglas Burdick
2021	J	`jnl`	ICDAR 2021 Competition on Scientific Literature Parsing. CoRR Antonio Jimeno-Yepes, Xu Zhong, Douglas Burdick
2021	—	`conf`	Impact of detecting clinical trial elements in exploration of COVID-19 literature. ICHI Simon Suster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno-Yepes, David Martinez Iraola, Yulia Otmakhova
2021	J	`jnl`	Impact of detecting clinical trial elements in exploration of COVID-19 literature. CoRR Simon Suster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno-Yepes, David Martínez, Yulia Otmakhova
2021	—	`ed.`	Proceedings of the 12th International Workshop on Health Text Mining and Information Analysis, LOUHI@EACL, Online, April 19, 2021 LOUHI@EACL Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi
2021	—	`ed.`	Proceedings of the Sixth Conference on Machine Translation, WMT@EMNLP 2021, Online Event, November 10-11, 2021 WMT@EMNLP Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Markus Freitag, Yvette Graham, Roman Grundkiewicz, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Tom Kocmi, André F. T. Martins, Makoto Morishita, Christof Monz
2021	J	`jnl`	Single versus Multiple Annotation for Named Entity Recognition of Mutations. CoRR David Martinez Iraola, Antonio Jimeno-Yepes
2021	J	`jnl`	Understanding in Artificial Intelligence. CoRR Stefan Maetschke, David Martinez Iraola, Pieter Barnard, Elaheh Shafieibavani, Peter Zhong, Ying Xu, Antonio Jimeno-Yepes
2021	Misc	`conf`	Using Discourse Structure to Differentiate Focus Entities from Background Entities in Scientific Literature. ALTA Antonio Jimeno-Yepes, Ameer Albahem, Karin Verspoor
2020	J	`jnl`	Adverse drug event detection using reason assignments in FDA drug labels. J. Biomed. Informatics Corey Sutphin, Kahyun Lee, Antonio Jimeno-Yepes, Özlem Uzuner, Bridget T. McInnes
2020	J	`jnl`	BioNorm: deep learning-based event normalization for the curation of reaction databases. Bioinform. Peiliang Lou, Antonio Jimeno-Yepes, Zai Zhang, Qinghua Zheng, Xiangrong Zhang, Chen Li
2020	J	`jnl`	COVID-SEE: Scientific Evidence Explorer for COVID-19 Related Research. CoRR Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martínez
2020	—	`conf`	Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages. WMT@EMNLP Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno-Yepes, Nancy Mah, David Martínez, Aurélie Névéol, Mariana L. Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann, Lana Yeganova
2020	—	`conf`	Global Locality in Biomedical Relation and Event Extraction. BioNLP Elaheh Shafieibavani, Antonio Jimeno-Yepes, Xu Zhong, David Martínez
2020	—	`conf`	Image-Based Table Recognition: Data, Model, and Evaluation. ECCV (21) Xu Zhong, Elaheh Shafieibavani, Antonio Jimeno-Yepes
2020	B	`conf`	MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish- and Portuguese-speaking Authors' Abstract Writing Practice. LREC Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves
2020	Misc	`conf`	Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning. AMIA Ying Xu, André Leier, Tatiana T. Marquez-Lago, Jue Xie, Antonio Jimeno-Yepes, James C. Whisstock, Campbell Wilson, Jiangning Song
2020	—	`ed.`	Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, LOUHI@EMNLP 2020, Online, November 20, 2020 LOUHI@EMNLP Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi
2020	—	`ed.`	Proceedings of the Fifth Conference on Machine Translation, WMT@EMNLP 2020, Online, November 19-20, 2020 WMT@EMNLP Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Yvette Graham, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André F. T. Martins, Makoto Morishita, Christof Monz, Masaaki Nagata, Toshiaki Nakazawa, Matteo Negri
2019	—	`conf`	Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. WMT (3) Rachel Bawden, Kevin Bretonnel Cohen, Cristian Grozea, Antonio Jimeno-Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurélie Névéol, Mariana L. Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro
2019	J	`jnl`	Global Locality in Event Extraction. CoRR Elaheh Shafieibavani, Antonio Jimeno-Yepes, Xu Zhong
2019	J	`jnl`	Image-based table recognition: data, model, and evaluation. CoRR Xu Zhong, Elaheh Shafieibavani, Antonio Jimeno-Yepes
2019	Misc	`conf`	Neural Relation Extraction from Biomedical Literature. AMIA Elaheh Shafieibavani, Antonio Jimeno-Yepes
2019	—	`ed.`	Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 1: Research Papers WMT (1) Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André F. T. Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor
2019	—	`ed.`	Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 2: Shared Task Papers, Day 1 WMT (2) Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André F. T. Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor
2019	—	`ed.`	Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 3: Shared Task Papers, Day 2 WMT (3) Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André F. T. Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor
2019	—	`ed.`	Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis LOUHI@EMNLP 2019, Hong Kong, November 3, 2019 LOUHI@EMNLP Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi
2019	A	`conf`	PubLayNet: Largest Dataset Ever for Document Layout Analysis. ICDAR Xu Zhong, Jianbin Tang, Antonio Jimeno-Yepes
2019	J	`jnl`	PubLayNet: largest dataset ever for document layout analysis. CoRR Xu Zhong, Jianbin Tang, Antonio Jimeno-Yepes
2018	Misc	`conf`	A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature. AMIA Antonio Jimeno-Yepes, Andrew D. MacKinlay, Natalie Gunn, Christine Schieber, Noel Faux, Matthew Downton, Benjamin Goudey, Richard L. Martin
2018	—	`conf`	Coarse-grained Semantic Characterization of Large Knowledge Resources. CERI Rafael Berlanga Llavori, Antonio Jimeno-Yepes, María Pérez, Indira Lanza-Cruz
2018	J	`jnl`	Confidence penalty, annealing Gaussian noise and zoneout for biLSTM-CRF networks for named entity recognition. CoRR Antonio Jimeno-Yepes
2018	—	`conf`	Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets. WMT (shared task) Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Cristian Grozea, Amy Siu, Madeleine Kittner, Karin Verspoor
2018	B	`conf`	Parallel Corpora for the Biomedical Domain. LREC Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves, Karin Verspoor
2018	—	`ed.`	Proceedings of the Third Conference on Machine Translation: Research Papers, WMT 2018, Belgium, Brussels, October 31 - November 1, 2018 WMT Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Lucia Specia, Marco Turchi, Karin Verspoor
2018	—	`ed.`	Proceedings of the Third Conference on Machine Translation: Shared Task Papers, WMT 2018, Belgium, Brussels, October 31 - November 1, 2018 WMT (shared task) Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Lucia Specia, Marco Turchi, Karin Verspoor
2018	J	`jnl`	Semantic Labeling Using a Low-Power Neuromorphic Platform. IEEE Geosci. Remote. Sens. Lett. Jianbin Tang, Benjamin Scott Mashford, Antonio Jimeno-Yepes
2017	Misc	`conf`	Detection of adverse drug reactions using medical named entities on Twitter. AMIA Andrew MacKinlay, Hafsah Aamer, Antonio Jimeno-Yepes
2017	—	`conf`	Findings of the WMT 2017 Biomedical Translation Shared Task. WMT Antonio Jimeno-Yepes, Aurélie Névéol, Mariana L. Neves, Karin Verspoor, Ondrej Bojar, Arthur Boyer, Cristian Grozea, Barry Haddow, Madeleine Kittner, Yvonne Lichtblau, Pavel Pecina, Roland Roller, Rudolf Rosa, Amy Siu, Philippe Thomas, Saskia Trescher
2017	A*	`conf`	Improving Classification Accuracy of Feedforward Neural Networks for Spiking Neuromorphic Chips. IJCAI Antonio Jimeno-Yepes, Jianbin Tang, Benjamin Scott Mashford
2017	J	`jnl`	Improving classification accuracy of feedforward neural networks for spiking neuromorphic chips. CoRR Antonio Jimeno-Yepes, Jianbin Tang, Benjamin Scott Mashford
2017	C	`conf`	Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings. BIBE Akm Sabbir, Antonio Jimeno-Yepes, Ramakanth Kavuluru
2017	—	`conf`	Named Entity Recognition with Stack Residual LSTM and Trainable Bias Decoding. IJCNLP(1) Quan Tran, Andrew MacKinlay, Antonio Jimeno-Yepes
2017	J	`jnl`	Named Entity Recognition with stack residual LSTM and trainable bias decoding. CoRR Quan Tran, Andrew MacKinlay, Antonio Jimeno-Yepes
2017	J	`jnl`	Neural-network-based analysis of EEG data using the neuromorphic TrueNorth chip for brain-machine interfaces. IBM J. Res. Dev. Benjamin S. Mashford, Antonio Jimeno-Yepes, Isabell Kiral-Kornek, Jianbin Tang, Stefan Harrer
2017	—	`ed.`	Proceedings of the Second Conference on Machine Translation, WMT 2017, Copenhagen, Denmark, September 7-8, 2017 WMT Ondrej Bojar, Christian Buck, Rajen Chatterjee, Christian Federmann, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Julia Kreutzer
2017	J	`jnl`	Word embeddings and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation. J. Biomed. Informatics Antonio Jimeno-Yepes
2016	—	`conf`	Decoding EEG and LFP signals using deep learning: heading TrueNorth. Conf. Computing Frontiers Ewan Nurse, Benjamin S. Mashford, Antonio Jimeno-Yepes, Isabell Kiral-Kornek, Stefan Harrer, Dean R. Freestone
2016	—	`conf`	Findings of the 2016 Conference on Machine Translation. WMT Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Varvara Logacheva, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Martin Popel, Matt Post, Raphael Rubino, Carolina Scarton, Lucia Specia, Marco Turchi, Karin Verspoor, Marcos Zampieri
2016	J	`jnl`	Higher order features and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation. CoRR Antonio Jimeno-Yepes
2016	J	`jnl`	Improving energy efficiency and classification accuracy of neuromorphic chips by learning binary synaptic crossbars. CoRR Antonio Jimeno-Yepes, Jianbin Tang
2016	J	`jnl`	Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings and Distant Supervision. CoRR A. K. M. Sabbir, Antonio Jimeno-Yepes, Ramakanth Kavuluru
2016	Misc	`conf`	NER for Medical Entities in Twitter using Sequence to Sequence Neural Networks. ALTA Antonio Jimeno-Yepes, Andrew MacKinlay
2016	Misc	`conf`	Syndromic Surveillance using Generic Medical Entities on Twitter. ALTA Pin Huang, Andrew MacKinlay, Antonio Jimeno-Yepes
2016	Misc	`conf`	Temporal Modelling of Geospatial Words in Twitter. ALTA Bo Han, Antonio Jimeno-Yepes, Andrew MacKinlay, Lianhua Chi
2016	B	`conf`	The Scielo Corpus: a Parallel Corpus of Scientific Publications for Biomedicine. LREC Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol
2016	B	`conf`	Weighted Population Code for low power neuromorphic image classification. IJCNN Antonio Jimeno-Yepes, Jianbin Tang, Shreya Saxena, Tobias Brosch, Arnon Amir
2015	J	`jnl`	Feature engineering for MEDLINE citation categorization with MeSH. BMC Bioinform. Antonio Jimeno-Yepes, Laura Plaza, Jorge Carrillo de Albornoz, James G. Mork, Alan R. Aronson
2015	—	`conf`	Identification and Analysis of Medical Entity Co-occurrences in Twitter. DTMBIO@CIKM Andrew MacKinlay, Antonio Jimeno-Yepes, Bo Han
2015	—	`conf`	Identifying Diseases, Drugs, and Symptoms in Twitter. MedInfo Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han, Qiang Chen
2015	—	`conf`	Investigating Public Health Surveillance using Twitter. BioNLP@IJCNLP Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han
2015	J	`jnl`	Knowledge based word-concept model estimation and refinement for biomedical text mining. J. Biomed. Informatics Antonio Jimeno-Yepes, Rafael Berlanga Llavori
2014	J	`jnl`	BioC interoperability track overview. Database J. Biol. Databases Curation Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
2014	Misc	`conf`	Deep Belief Networks and Biomedical Text Categorisation. ALTA Antonio Jimeno-Yepes, Andrew MacKinlay, Justin Bedo, Rahil Garvani, Qiang Chen
2014	Misc	`conf`	Identifying Twitter Location Mentions. ALTA Bo Han, Antonio Jimeno-Yepes, Andrew MacKinlay, Qiang Chen
2014	J	`jnl`	Literature mining of genetic variants for curation: quantifying the importance of supplementary material. Database J. Biol. Databases Curation Antonio Jimeno-Yepes, Karin Verspoor
2014	J	`jnl`	Mutation extraction tools can be combined for robust recognition of genetic variants in the literature. F1000Research Antonio Jimeno-Yepes, Karin Verspoor
2013	—	`conf`	An Evaluation of the Concept Retrieval Annotation for Spanish-English CLEFER Parallel Corpora. CLEF (Working Notes) Rafael Berlanga Llavori, Antonio Jimeno-Yepes, María Pérez Catalán, Dietrich Rebholz-Schuhmann
2013	J	`jnl`	Annotating the biomedical literature for the human variome. Database J. Biol. Databases Curation Karin Verspoor, Antonio Jimeno-Yepes, Lawrence Cavedon, Tara McIntosh, Asha Herten-Crabb, Zoë Thomas, John-Paul Plazzer
2013	J	`jnl`	Combining MEDLINE and publisher data to create parallel corpora for the automatic translation of biomedical text. BMC Bioinform. Antonio Jimeno-Yepes, Élise Prieur-Gaston, Aurélie Névéol
2013	Misc	`conf`	Comparison and combination of several MeSH indexing approaches. AMIA Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
2013	—	`conf`	Context-Dependent Semantic Annotation in Cross-Lingual Biomedical Resources. CLEF Rafael Berlanga Llavori, Antonio Jimeno-Yepes, María Pérez Catalán, Dietrich Rebholz-Schuhmann
2013	—	`conf`	Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. CLEF Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors
2013	J	`jnl`	Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources. J. Biomed. Semant. Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Chen Li, Antonio Jimeno-Yepes, Robert Hoehndorf, Rolf Backofen, Ian Lewin
2013	—	`conf`	Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data. BioNLP@ACL (Shared Task) Andrew MacKinlay, David Martínez, Antonio Jimeno-Yepes, Haibin Liu, W. John Wilbur, Karin Verspoor
2013	J	`jnl`	GeneRIF indexing: sentence selection based on machine learning. BMC Bioinform. Antonio Jimeno-Yepes, J. Caitlin Sticco, James G. Mork, Alan R. Aronson
2013	—	`conf`	Identifying Publication Types Using Machine Learning. BioASQ@CLEF Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson
2013	Misc	`conf`	Impact of Corpus Diversity and Complexity on NER Performance. ALTA Tatyana Shmanina, Ingrid Zukerman, Antonio Jimeno-Yepes, Lawrence Cavedon, Karin Verspoor
2013	J	`jnl`	Monitoring named entity recognition: the League Table. J. Biomed. Semant. Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Antonio Jimeno-Yepes, Ian Lewin
2013	—	`conf`	Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge. CLEF (Working Notes) Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors
2013	J	`jnl`	PCorral - interactive mining of protein interactions from MEDLINE. Database J. Biol. Databases Curation Chen Li, Antonio Jimeno-Yepes, Miguel Arregui, Harald Kirsch, Dietrich Rebholz-Schuhmann
2013	—	`conf`	The NLM Medical Text Indexer System for Indexing Biomedical Literature. BioASQ@CLEF James G. Mork, Antonio Jimeno-Yepes, Alan R. Aronson
2013	—	`conf`	Using the Argumentative Structure of Scientific Literature to Improve Information Access. BioNLP@ACL Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson
2012	J	`jnl`	A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. J. Comput. Sci. Eng. Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
2012	—	`conf`	Disambiguating automatically-generated semantic annotations for Life Science open registries. E-LKR Antonio Jimeno-Yepes, Rafael Berlanga Llavori, María Pérez Catalán
2012	—	`conf`	Integration of UMLS and MEDLINE in Unsupervised Word Sense Disambiguation. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text Antonio Jimeno-Yepes, Alan R. Aronson
2012	—	`conf`	Knowledge-based and knowledge-lean methods combined in unsupervised word sense disambiguation. IHI Antonio Jimeno-Yepes, Alan R. Aronson
2012	—	`conf`	MEDLINE MeSH indexing: lessons learned from machine learning and future directions. IHI Antonio Jimeno-Yepes, James G. Mork, Bartlomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson
2012	—	`conf`	NLM at TREC 2012 Medical Records Track. TREC Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, François-Michel Lang, James G. Mork, Nicolas Ide, Alan R. Aronson
2012	—	`ed.`	Proceedings of the 2nd International Workshop on Exploiting Large Knowledge Repositories, Castellón de la Plana, Spain, September 7, 2012 E-LKR Ernesto Jiménez-Ruiz, Horacio Saggion, María José Aramburu Cabo, Roxana Dánger, Antonio Jimeno-Yepes, Elena Lloret, Manuel Palomar
2011	—	`conf`	A Knowledge-Based Approach to Medical Records Retrieval. TREC Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, Bastien Rance, François-Michel Lang, Nicholas C. Ide, Emilia Apostolova, Alan R. Aronson
2011	J	`jnl`	Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2011	J	`jnl`	Collocation analysis for UMLS knowledge-based word sense disambiguation. BMC Bioinform. Antonio Jimeno-Yepes, Bridget T. McInnes, Alan R. Aronson
2011	—	`conf`	Preliminary Results for Biomedical Word Sense Disambiguation Based on Semantic Clustering. DEXA Workshops Tamara Martín-Wanton, Rafael Berlanga Llavori, Antonio Jimeno-Yepes
2011	—	`conf`	Self-training and co-training in biomedical word sense disambiguation. BioNLP@ACL Antonio Jimeno-Yepes, Alan R. Aronson
2010	—	`ch.`	Applications of Ontologies and Text Mining in the Biomedical Domain. Ontology Theory, Management and Design Antonio Jimeno-Yepes, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann
2010	—	`conf`	Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
2010	J	`jnl`	Calbc Silver Standard Corpus. J. Bioinform. Comput. Biol. Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Elena Beisswanger, Udo Hahn
2010	J	`jnl`	Improving an automatically extracted corpus for UMLS Metathesaurus word sense disambiguation. Proces. del Leng. Natural Antonio Jimeno-Yepes, Alan R. Aronson
2010	J	`jnl`	Knowledge-based biomedical word sense disambiguation: comparison of approaches. BMC Bioinform. Antonio Jimeno-Yepes, Alan R. Aronson
2010	J	`jnl`	Measuring prediction capacity of individual verbs for the identification of protein interactions. J. Biomed. Informatics Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Miguel Arregui, Harald Kirsch
2010	J	`jnl`	Ontology refinement for improved information retrieval. Inf. Process. Manag. Antonio Jimeno-Yepes, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann
2010	C	`conf`	Query Expansion for UMLS Metathesaurus Disambiguation Based on Automatic Corpus Extraction. ICMLA Antonio Jimeno-Yepes, Alan R. Aronson
2009	J	`jnl`	Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb. BMC Bioinform. Kevin Nagel, Antonio Jimeno-Yepes, Dietrich Rebholz-Schuhmann
2009	—	`—`	Ontology refinement for improved information retrieval in the biomedical domain. Antonio Jimeno-Yepes
2009	J	`jnl`	Reuse of terminological resources for efficient ontological engineering in Life Sciences. BMC Bioinform. Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann
2009	—	`ch.`	Using Biomedical Terminological Resources for Information Retrieval. Information Retrieval in Biomedicine Piotr Pezik, Antonio Jimeno-Yepes, Dietrich Rebholz-Schuhmann
2008	—	`conf`	Annotation of protein residues based on a literature analysis: cross-validation against UniProtKB. AIMM Kevin Nagel, Antonio Jimeno-Yepes, Dietrich Rebholz-Schuhmann
2008	J	`jnl`	Assessment of disease named entity recognition on a corpus of annotated sentences. BMC Bioinform. Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz, Vivian Lee, Sylvain Gaudan, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann
2008	J	`jnl`	Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text. EURASIP J. Bioinform. Syst. Biol. Sylvain Gaudan, Antonio Jimeno-Yepes, Vivian Lee, Dietrich Rebholz-Schuhmann
2008	J	`jnl`	Text processing through Web services: calling Whatizit. Bioinform. Dietrich Rebholz-Schuhmann, Miguel Arregui, Sylvain Gaudan, Harald Kirsch, Antonio Jimeno-Yepes
2008	—	`conf`	Use of Shared Lexical Resources for Efficient Ontological Engineering. SWAT4LS Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann
2007	—	`conf`	Information Retrieval and Information Extraction in TREC Genomics 2007. TREC Antonio Jimeno-Yepes, Piotr Pezik
2006	—	`conf`	Report on the TREC 2006 Experiment: Genomics Track. TREC Patrick Ruch, Frédéric Ehrler, Julien Gobeill, Imad Tbahriti, Antonio Jimeno-Yepes
2005	J	`jnl`	Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot. BMC Bioinform. Frédéric Ehrler, Antoine Geissbühler, Antonio Jimeno-Yepes, Patrick Ruch