Anton I. Korobeynikov

21 papers B 2C 1Journal 16Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
MGnify: the microbiome sequence data analysis resource in 2023.
Nucleic Acids Res.
Lorna J. Richardson, Ben Allen, Germana Baldi, Martin Beracochea, Maxwell L. Bileschi, Tony Burdett, Josephine Burgin, Juan Caballero, Guy Cochrane, Lucy J. Colwell, Tom Curtis, Alejandra Escobar-Zepeda, Tatiana A. Gurbich, Varsha Kale, Anton I. Korobeynikov, Shriya Raj, Alexander B. Rogers, Ekaterina A. Sakharova, Santiago Sanchez, Darren J. Wilkinson, Robert D. Finn
2021 J jnl
coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies.
Bioinform.
Dmitry Meleshko, Iman Hajirasouliha, Anton I. Korobeynikov
2020 J jnl
CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
BMC Bioinform.
Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
2020 J jnl
Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
BMC Bioinform.
Yulia Kondratenko, Anton I. Korobeynikov, Alla L. Lapidus
2020 J jnl
MGnify: the microbiome analysis resource in 2020.
Nucleic Acids Res.
Alex L. Mitchell, Alexandre Almeida, Martin Beracochea, Miguel A. Boland, Josephine Burgin, Guy Cochrane, Michael R. Crusoe, Varsha Kale, Simon C. Potter, Lorna J. Richardson, Ekaterina A. Sakharova, Maxim Scheremetjew, Anton I. Korobeynikov, Alexander Shlemov, Olga Kunyavskaya, Alla L. Lapidus, Robert D. Finn
2020 J jnl
SPAligner: alignment of long diverged molecular sequences to assembly graphs.
BMC Bioinform.
Tatiana Dvorkina, Dmitry Antipov, Anton I. Korobeynikov, Sergey Nurk
2019 J jnl
IonHammer: Homopolymer-Space Hamming Clustering for IonTorrent Read Error Correction.
J. Comput. Biol.
Vasily Ershov, Artem Tarasov, Alla L. Lapidus, Anton I. Korobeynikov
2019 — conf
PathRacer: Racing Profile HMM Paths on Assembly Graph.
AlCoB
Alexander Shlemov, Anton I. Korobeynikov
2019 — ch.
Sequence Analysis.
Encyclopedia of Bioinformatics and Computational Biology (3)
Andrey D. Prjibelski, Anton I. Korobeynikov, Alla L. Lapidus
2017 C conf
Assessing the Significance of Peptide Spectrum Match Scores.
WABI
Anastasiia Abramova, Anton I. Korobeynikov
2016 J jnl
hybridSPAdes: an algorithm for hybrid assembly of short and long reads.
Bioinform.
Dmitry Antipov, Anton I. Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner
2016 B conf
metaSPAdes: A New Versatile de novo Metagenomics Assembler.
RECOMB
Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner
2015 J jnl
Assembling short reads from jumping libraries with large insert sizes.
Bioinform.
Irina Vasilinetc, Andrey D. Prjibelski, Alexey A. Gurevich, Anton I. Korobeynikov, Pavel A. Pevzner
2014 J jnl
Basic Singular Spectrum Analysis and forecasting with R.
Comput. Stat. Data Anal.
Nina Golyandina, Anton I. Korobeynikov
2014 J jnl
ExSPAnder: a universal repeat resolver for DNA fragment assembly.
Bioinform.
Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner
2013 B conf
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads.
RECOMB
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2013 J jnl
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products.
J. Comput. Biol.
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner
2013 J jnl
BayesHammer: Bayesian clustering for error correction in single-cell sequencing.
BMC Genom.
Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev
2012 J jnl
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
CoRR
Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev
2012 J jnl
Consistency of Parametric MLE Under Mixed Case Interval Censoring.
Commun. Stat. Simul. Comput.
Anton I. Korobeynikov
2009 J jnl
Computation- and Space-Efficient Implementation of SSA.
CoRR
Anton I. Korobeynikov