Antoine Neuraz

35 papers Misc 2Journal 23Unranked 9

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Active learning for extracting rare adverse events from electronic health records: A study in pediatric cardiology. Int. J. Medical Informatics Sophie Quennelle, Sophie Malekzadeh-Milani, Nicolas Garcelon, Hassan Faour, Anita Burgun, Carole Faviez, Rosy Tsopra, Damien Bonnet, Antoine Neuraz
2024	—	`conf`	Comparing NER Approaches on French Clinical Text, with Easy-to-Reuse Pipelines. MIE Thibault Hubert, Ghislain Vaillant, Olivier Birot, Camila Arias, Antoine Neuraz, Adrien Coulet
2024	J	`jnl`	Deep Reinforcement Learning for Personalized Diagnostic Decision Pathways Using Electronic Health Records: A Comparative Study on Anemia and Systemic Lupus Erythematosus. CoRR Lillian Muyama, Antoine Neuraz, Adrien Coulet
2024	J	`jnl`	Deep Reinforcement Learning for personalized diagnostic decision pathways using Electronic Health Records: A comparative study on anemia and Systemic Lupus Erythematosus. Artif. Intell. Medicine Lillian Muyama, Antoine Neuraz, Adrien Coulet
2024	J	`jnl`	Facilitating phenotyping from clinical texts: the medkit library. Bioinform. Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet
2024	J	`jnl`	Facilitating phenotyping from clinical texts: the medkit library. CoRR Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet
2024	J	`jnl`	Machine learning approaches for the discovery of clinical pathways from patient data: A systematic review. J. Biomed. Informatics Lillian Muyama, Antoine Neuraz, Adrien Coulet
2024	J	`jnl`	Step-by-Step Guidance to Differential Anemia Diagnosis with Real-World Data and Deep Reinforcement Learning. CoRR Lillian Muyama, Estelle Lu, Geoffrey Cheminet, Jacques Pouchot, Bastien Rance, Anne-Isabelle Tropeano, Antoine Neuraz, Adrien Coulet
2023	J	`jnl`	Extracting Diagnosis Pathways from Electronic Health Records Using Deep Reinforcement Learning. CoRR Lillian Muyama, Antoine Neuraz, Adrien Coulet
2023	—	`conf`	TAXN: Translate Align Extract Normalize, a Multilingual Extraction Tool for Clinical Texts. MedInfo Antoine Neuraz, Ivan Lerner, Olivier Birot, Camila Arias, Larry Han, Clara-Lea Bonzel, Tianxi Cai, Kim Tâm Huynh, Adrien Coulet
2023	—	`conf`	The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. MIE Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Antoine Neuraz, Anita Burgun, Nicolas Garcelon
2023	J	`jnl`	The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. CoRR Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Anita Burgun, Antoine Neuraz, Nicolas Garcelon
2022	—	`conf`	Determining the Set of Items to Include in Breast Operative Reports, Using Clustering Algorithms on Retrospective Data Extracted from Clinical DataWarehouse. ICIMTH Adrien Boukobza, Maxime Wack, Antoine Neuraz, Daniela Geromin, Cécile Badoual, Anne-Sophie Bats, Anita Burgun, Meriem Koual, Rosy Tsopra
2022	J	`jnl`	International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber
2022	J	`jnl`	Learning structures of the French clinical language: development and validation of word embedding models using 21 million clinical reports from electronic health records. CoRR Basile Dura, Charline Jean, Xavier Tannier, Alice Calliger, Romain Bey, Antoine Neuraz, Rémi Flicoteaux
2022	J	`jnl`	SurvMaximin: Robust federated approach to transporting survival risk prediction models. J. Biomed. Informatics Xuan Wang, Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat, Clara-Lea Bonzel, Yuan Luo, Rui Duan, Nathan P. Palmer, Meghan R. Hutch, Alba Gutiérrez-Sacristán, Riccardo Bellazzi, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Noelia García-Barrio, Romain Griffier, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Mark S. Keller, Jeffrey G. Klann, Sehi L'Yi, Sara Lozano-Zahonero, Sarah E. Maidlow, Adeline Makoudjou, Alberto Malovini, Bertrand Moal, Jason H. Moore, Michele Morris, Danielle L. Mowery, Shawn N. Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S. Omenn, Lav P. Patel, Miguel Pedrera-Jiménez, Andrea Prunotto, Malarkodi J. Samayamuthu, Fernando J. Sanz Vidorreta, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Andrew M. South, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Patric Tippmann, Shyam Visweswaran, Zongqi Xia, William Yuan, Daniela Zöller, Isaac S. Kohane, Paul Avillach, Zijian Guo, Tianxi Cai
2021	Misc	`conf`	Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. AMIA William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance
2021	J	`jnl`	Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. J. Am. Medical Informatics Assoc. William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance
2021	J	`jnl`	Lessons Learned from the Usability Evaluation of a Simulated Patient Dialogue System. J. Medical Syst. Leonardo Campillos-Llanos, Catherine Thomas, Éric Bilinski, Antoine Neuraz, Sophie Rosset, Pierre Zweigenbaum
2021	—	`conf`	Using Deep Learning to Improve Phenotyping from Clinical Reports. MedInfo Marc Vincent, Maxime Douillet, Ivan Lerner, Antoine Neuraz, Anita Burgun, Nicolas Garcelon
2020	—	`—`	Compréhension du langage naturel pour le dossier patient informatisé : accès à l'information et extraction d'information. (Natural language understanding for the electronic health records : access to information and information extraction). Antoine Neuraz
2020	J	`jnl`	Learning the grammar of prescription: recurrent neural network grammars for medication information extraction in clinical texts. CoRR Ivan Lerner, Jordan Jouffroy, Anita Burgun, Antoine Neuraz
2020	—	`conf`	Optimization of a Sequential Decision Making Problem for a Rare Disease Diagnostic Application. ICAART (2) Rémi Besson, Erwan Le Pennec, Emmanuel Spaggiari, Antoine Neuraz, Julien Stirnemann, Stéphanie Allassonnière
2020	—	`conf`	The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding. MIE Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2020	Misc	`conf`	What is best for spoken language understanding: small but task-dependant embeddings or huge but out-of-domain embeddings? ICASSP Sahar Ghannay, Antoine Neuraz, Sophie Rosset
2019	—	`conf`	Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task? MedInfo Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2019	—	`conf`	Evaluating the Impact of Text Duplications on a Corpus of More than 600, 000 Clinical Narratives in a French Hospital. MedInfo William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, Bastien Rance
2019	J	`jnl`	Phenotypic similarity for rare disease: Ciliopathy diagnoses and subtyping. J. Biomed. Informatics Xiaoyi Chen, Nicolas Garcelon, Antoine Neuraz, Katy Billot, Marc Lelarge, Thomas Bonald, Hugo Garcia, Yoann Martin, Vincent Benoit, Marc Vincent, Hassan Faour, Maxime Douillet, Stanislas Lyonnet, Sophie Saunier, Anita Burgun
2019	J	`jnl`	What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse. Comput. Methods Programs Biomed. Vincent Looten, Liliane Kong Win Chang, Antoine Neuraz, Marie-Anne Landau-Loriot, Benoit Vedie, Jean-Louis Paul, Laëtitia Mauge, Nadia Rivet, Angela Bonifati, Gilles Chatellier, Anita Burgun, Bastien Rance
2018	J	`jnl`	A Model-Based Reinforcement Learning Approach for a Rare Disease Diagnostic Task. CoRR Rémi Besson, Erwan Le Pennec, Stéphanie Allassonnière, Julien Stirnemann, Emmanuel Spaggiari, Antoine Neuraz
2018	J	`jnl`	A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. J. Biomed. Informatics Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, Arthur Delapalme, Arnold Munnich, Anita Burgun, Bastien Rance
2018	J	`jnl`	Natural language understanding for task oriented dialog in the biomedical domain in a low resources context. CoRR Antoine Neuraz, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2017	J	`jnl`	Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack. J. Biomed. Informatics Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Sven Kracker, Felipe Suarez, Nadia Bahi-Buisson, Smail Hadj-Rabia, Alain Fischer, Arnold Munnich, Anita Burgun
2017	J	`jnl`	Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse. J. Am. Medical Informatics Assoc. Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Anita Burgun
2013	J	`jnl`	Phenome-Wide Association Studies on a Quantitative Trait: Application to TPMT Enzyme Activity and Thiopurine Therapy in Pharmacogenomics. PLoS Comput. Biol. Antoine Neuraz, Laurent Chouchana, Georgia Malamut, Christine Le Beller, Denis Roche, Philippe Beaune, Patrice Degoulet, Anita Burgun, Marie-Anne Loriot, Paul Avillach