Anthony R. Bradley

15 papers Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Testing the limits of SMILES-based de novo molecular generation with curriculum and deep reinforcement learning.
Nat. Mac. Intell.
Maranga Mokaya, Fergus Imrie, Willem P. van Hoorn, Aleksandra Kalisz, Anthony R. Bradley, Charlotte M. Deane
2022 J jnl
Coverage Score: A Model Agnostic Method to Efficiently Explore Chemical Space.
J. Chem. Inf. Model.
Daniel J. Woodward, Anthony R. Bradley, Willem P. van Hoorn
2022 J jnl
Fragment Hotspot Mapping to Identify Selectivity-Determining Regions between Related Proteins.
J. Chem. Inf. Model.
Mihaela D. Smilova, Peter R. Curran, Chris J. Radoux, Frank von Delft, Jason C. Cole, Anthony R. Bradley, Brian D. Marsden
2022 J jnl
The druggable genome: Twenty years later.
Frontiers Bioinform.
Chris J. Radoux, Francesca V. Vianello, Jake E. McGreig, Nikita Desai, Anthony R. Bradley
2021 J jnl
Generating property-matched decoy molecules using deep learning.
Bioinform.
Fergus Imrie, Anthony R. Bradley, Charlotte M. Deane
2020 J jnl
Deep Generative Models for 3D Linker Design.
J. Chem. Inf. Model.
Fergus Imrie, Anthony R. Bradley, Mihaela van der Schaar, Charlotte M. Deane
2020 J jnl
Hotspots API: A Python Package for the Detection of Small Molecule Binding Hotspots and Application to Structure-Based Drug Design.
J. Chem. Inf. Model.
Peter R. Curran, Chris J. Radoux, Mihaela D. Smilova, Richard A. Sykes, Alicia P. Higueruelo, Anthony R. Bradley, Brian D. Marsden, David R. Spring, Tom L. Blundell, Andrew R. Leach, William R. Pitt, Jason C. Cole
2019 J jnl
BioJava 5: A community driven open-source bioinformatics library.
PLoS Comput. Biol.
Aleix Lafita, Spencer Bliven, Andreas Prlic, Dmytro Guzenko, Peter W. Rose, Anthony R. Bradley, Paolo Pavan, Douglas Myers-Turnbull, Yana Valasatava, Michael L. Heuer, Matt Larson, Stephen K. Burley, Jose M. Duarte
2018 J jnl
NGL viewer: web-based molecular graphics for large complexes.
Bioinform.
Alexander S. Rose, Anthony R. Bradley, Yana Valasatava, Jose M. Duarte, Andreas Prlic, Peter W. Rose
2018 J jnl
Protein Family-Specific Models Using Deep Neural Networks and Transfer Learning Improve Virtual Screening and Highlight the Need for More Data.
J. Chem. Inf. Model.
Fergus Imrie, Anthony R. Bradley, Mihaela van der Schaar, Charlotte M. Deane
2017 J jnl
MMTF - An efficient file format for the transmission, visualization, and analysis of macromolecular structures.
PLoS Comput. Biol.
Anthony R. Bradley, Alexander S. Rose, Antonín Pavelka, Yana Valasatava, Jose M. Duarte, Andreas Prlic, Peter W. Rose
2017 J jnl
The RCSB protein data bank: integrative view of protein, gene and 3D structural information.
Nucleic Acids Res.
Peter W. Rose, Andreas Prlic, Ali Altunkaya, Chunxiao Bi, Anthony R. Bradley, Cole H. Christie, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Rachel Kramer Green, David S. Goodsell, Brian P. Hudson, Tara Kalro, Robert Lowe, Ezra Peisach, Christopher Randle, Alexander S. Rose, Chenghua Shao, Yi-Ping Tao, Yana Valasatava, Maria Voigt, John D. Westbrook, Jesse Woo, Huanwang Yang, Jasmine Young, Christine Zardecki, Helen M. Berman, Stephen K. Burley
2016 — conf
Web-based molecular graphics for large complexes.
Web3D
Alexander S. Rose, Anthony R. Bradley, Yana Valasatava, Jose M. Duarte, Andreas Prlic, Peter W. Rose
2015 J jnl
WONKA: objective novel complex analysis for ensembles of protein-ligand structures.
J. Comput. Aided Mol. Des.
Anthony R. Bradley, Ian D. Wall, Frank von Delft, Darren V. S. Green, Charlotte M. Deane, Brian D. Marsden
2014 J jnl
OOMMPPAA: A Tool To Aid Directed Synthesis by the Combined Analysis of Activity and Structural Data.
J. Chem. Inf. Model.
Anthony R. Bradley, Ian D. Wall, Darren V. S. Green, Charlotte M. Deane, Brian D. Marsden