Anthony J. Cox

24 papers B 2C 3Journal 19
YearRankTypeTitle / Venue / Authors
2024 B conf
A Class of Heuristics for Reducing the Number of BWT-Runs in the String Ordering Problem.
CPM
Gianmarco Bertola, Anthony J. Cox, Veronica Guerrini, Giovanna Rosone
2018 J jnl
Canvas SPW: calling de novo copy number variants in pedigrees.
Bioinform.
Sergii Ivakhno, Eric Roller, Camilla Colombo, Philip Tedder, Anthony J. Cox
2017 J jnl
AKT: ancestry and kinship toolkit.
Bioinform.
Rudy Arthur, Ole Schulz-Trieglaff, Anthony J. Cox, Jared O'Connell
2017 J jnl
tHapMix: simulating tumour samples through haplotype mixtures.
Bioinform.
Sergii Ivakhno, Camilla Colombo, Stephen Tanner, Philip Tedder, Stefano Berri, Anthony J. Cox
2016 J jnl
Lightweight LCP Construction for Very Large Collections of Strings.
CoRR
Anthony J. Cox, Fabio Garofalo, Giovanna Rosone, Marinella Sciortino
2016 J jnl
Lightweight LCP construction for very large collections of strings.
J. Discrete Algorithms
Anthony J. Cox, Fabio Garofalo, Giovanna Rosone, Marinella Sciortino
2016 J jnl
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.
Bioinform.
Xiaoyu Chen, Ole Schulz-Trieglaff, Richard Shaw, Bret Barnes, Felix Schlesinger, Morten Källberg, Anthony J. Cox, Semyon Kruglyak, Christopher T. Saunders
2016 C conf
RLZAP: Relative Lempel-Ziv with Adaptive Pointers.
SPIRE
Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén
2016 J jnl
RLZAP: Relative Lempel-Ziv with Adaptive Pointers.
CoRR
Anthony J. Cox, Andrea Farruggia, Travis Gagie, Simon J. Puglisi, Jouni Sirén
2016 J jnl
Rapid genotype refinement for whole-genome sequencing data using multi-variate normal distributions.
Bioinform.
Rudy Arthur, Jared O'Connell, Ole Schulz-Trieglaff, Anthony J. Cox
2015 J jnl
NxTrim: optimized trimming of Illumina mate pair reads.
Bioinform.
Jared O'Connell, Ole Schulz-Trieglaff, Emma Carlson, Matthew M. Hims, Niall A. Gormley, Anthony J. Cox
2014 J jnl
Adaptive reference-free compression of sequence quality scores.
Bioinform.
Lilian Janin, Giovanna Rosone, Anthony J. Cox
2014 J jnl
BEETL-fastq: a searchable compressed archive for DNA reads.
Bioinform.
Lilian Janin, Ole Schulz-Trieglaff, Anthony J. Cox
2013 J jnl
Adaptive reference-free compression of sequence quality scores
CoRR
Lilian Janin, Giovanna Rosone, Anthony J. Cox
2013 J jnl
Lightweight LCP Construction for Next-Generation Sequencing Datasets
CoRR
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino
2013 J jnl
Lightweight algorithms for constructing and inverting the BWT of string collections.
Theor. Comput. Sci.
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone
2013 J jnl
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences.
BMC Bioinform.
Christina Ander, Ole Schulz-Trieglaff, Jens Stoye, Anthony J. Cox
2012 C conf
Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes.
WABI
Anthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole Schulz-Trieglaff
2012 J jnl
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform
CoRR
Anthony J. Cox, Markus J. Bauer, Tobias Jakobi, Giovanna Rosone
2012 J jnl
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform.
Bioinform.
Anthony J. Cox, Markus J. Bauer, Tobias Jakobi, Giovanna Rosone
2012 C conf
Lightweight LCP Construction for Next-Generation Sequencing Datasets.
WABI
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino
2011 B conf
Lightweight BWT Construction for Very Large String Collections.
CPM
Markus J. Bauer, Anthony J. Cox, Giovanna Rosone
2010 J jnl
CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data.
Bioinform.
Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré
1999 J jnl
Row-Wise Backward Stable Elimination Methods for the Equality Constrained Least Squares Problem.
SIAM J. Matrix Anal. Appl.
Anthony J. Cox, Nicholas J. Higham