Anthony Huffman

15 papers Journal 9Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Fourfold Pathogen Reference Ontology Suite.
CoRR
Shane Babcock, Carter Benson, Giacomo De Colle, Sydney Cohen, Alexander D. Diehl, Ram A. N. R. Challa, Ray Mavrovich, Joshua Billig, Anthony Huffman, Yongqun He, John Beverley
2025 J jnl
A fourfold pathogen reference ontology suite.
J. Biomed. Semant.
John Beverley, Shane Babcock, Carter Benson, Giacomo De Colle, Sydney Cohen, Alexander D. Diehl, Ram A. N. R. Challa, Ray Mavrovich, Joshua Billig, Anthony Huffman, Yongqun He
2025 — conf
Panel Discussion Summary: AI, Ontologies, and the Next Generation of Researchers.
ICBO
Olga Mashkova, Anthony Huffman
2024 — conf
Empowering Standardization of Cancer Vaccines Through Ontology: Enhanced Modeling and Data Analysis.
ICBO
Jie Zheng, Xingxian Li, Anna Maria Masci, Hayleigh Kahn, Anthony Huffman, Eliyas Asfaw, Yuanyi Pan, Jinjing Guo, Virginia He, Justin Song, Andrey I. Seleznev, Asiyah Yu Lin, Yongqun He
2024 J jnl
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis.
J. Biomed. Semant.
Jie Zheng, Xingxian Li, Anna Maria Masci, Hayleigh Kahn, Anthony Huffman, Eliyas Asfaw, Yuanyi Pan, Jinjing Guo, Virginia He, Justin Song, Andrey I. Seleznev, Asiyah Yu Lin, Yongqun He
2024 — conf
Grounding Realizable Entities.
ICBO
Michael Rabenberg, Carter Benson, Federico Donato, Yongqun He, Anthony Huffman, Shane Babcock, John Beverley
2024 J jnl
Grounding Realizable Entities.
CoRR
Michael Rabenberg, Carter Benson, Federico Donato, Yongqun He, Anthony Huffman, Shane Babcock, John Beverley
2024 J jnl
Ontological representation, modeling, and analysis of parasite vaccines.
J. Biomed. Semant.
Anthony Huffman, Xumeng Zhang, Meghana Lanka, Jie Zheng, Anna Maria Masci, Yongqun He
2023 — conf
Ontology-based Representation and Analysis of Conditional Vaccine Immune Responses Using Omics Data.
ICBO
Anthony Huffman, Edison Ong, Timothy Brunson, Nasim Sanati, Jie Zheng, Anna Maria Masci, Guanming Wu, Yongqun He
2022 J jnl
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.
J. Biomed. Semant.
Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith
2022 J jnl
COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning.
Briefings Bioinform.
Anthony Huffman, Edison Ong, Junguk Hur, Adonis D'mello, Hervé Tettelin, Yongqun He
2021 J jnl
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature.
J. Biomed. Semant.
Anthony Huffman, Anna Maria Masci, Jie Zheng, Nasim Sanati, Timothy Brunson, Guanming Wu, Yongqun He
2021 J jnl
Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.
Nucleic Acids Res.
Edison Ong, Michael F. Cooke, Anthony Huffman, Zuoshuang Xiang, Mei U. Wong, Haihe Wang, Meenakshi Seetharaman, Ninotchka Valdez, Yongqun He
2020 — conf
CIDO: The Community-Based Coronavirus Infectious Disease Ontology.
ICBO/ODLS
Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman, Hsin-Hui Huang, John Beverley, Asiyah Yu Lin, William D. Duncan, Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian D. Athey, Barry Smith
2020 — conf
OGG-CoV: Ontology Representation and Analysis of Genes and Genomes of Coronaviruses (short paper).
ICBO/ODLS
Anthony Huffman, Yongqun He