Annie Chateau

45 papers B 3C 10Journal 20Unranked 11
YearRankTypeTitle / Venue / Authors
2026 — conf
A Bioinformatics Methodological Approach for the Construction and Analysis of a bos indicus Pangenome.
BIOSTEC (2)
Chiria Jorotiana, Jean-Claude Richard Rakotozafy, Aimé Richard Hajalalaina, Annie Chateau, Anne-Muriel Arigon
2026 J jnl
Using reinforcement learning in genome assembly: in-depth analysis of a Q-learning assembler.
Frontiers Bioinform.
Kleber Padovani de Souza, Rafael Cabral Borges, Roberto Xavier, André C. P. L. F. de Carvalho, Anna Reali, Annie Chateau, Ronnie Alves
2022 J jnl
On a greedy approach for genome scaffolding.
Algorithms Mol. Biol.
Tom Davot, Annie Chateau, Rohan Fossé, Rodolphe Giroudeau, Mathias Weller
2022 J jnl
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes.
J. Open Source Softw.
Clément Agret, Annie Chateau, Gaëtan Droc, Gautier Sarah, Manuel Ruiz, Alban Mancheron
2021 J jnl
BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes.
BMC Bioinform.
Yasmine Mansour, Annie Chateau, Anna-Sophie Fiston-Lavier
2021 J jnl
Efficient assembly consensus algorithms for divergent contig sets.
Comput. Biol. Chem.
Annie Chateau, Tom Davot, Manuel Lafond
2021 J jnl
Involving repetitive regions in scaffolding improvement.
J. Bioinform. Comput. Biol.
Quentin Delorme, Rémy Costa, Yasmine Mansour, Anna-Sophie Fiston-Lavier, Annie Chateau
2021 J jnl
Producing Genomic Sequences after Genome Scaffolding with Ambiguous Paths: Complexity, Approximation and Lower Bounds.
Algorithmica
Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller, Dorine Tabary
2021 J jnl
Towards a reinforcement learning de novo genome assembler.
CoRR
Kleber Padovani de Souza, Roberto Xavier, André C. P. L. F. de Carvalho, Anna Reali, Annie Chateau, Ronnie Alves
2020 B conf
Linearizing Genomes: Exact Methods and Local Search.
SOFSEM
Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
2019 J jnl
A general framework for genome rearrangement with biological constraints.
Algorithms Mol. Biol.
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
2019 — conf
Genome Assembly Using Reinforcement Learning.
BSB
Roberto Xavier, Kleber Padovani de Souza, Annie Chateau, Ronnie Alves
2019 J jnl
Machine learning meets genome assembly.
Briefings Bioinform.
Kleber Padovani de Souza, João Carlos Setubal, André Carlos Ponce de Leon Ferreira de Carvalho, Guilherme Oliveira, Annie Chateau, Ronnie Alves
2019 — conf
New Polynomial-Time Algorithm Around the Scaffolding Problem.
AlCoB
Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
2019 C conf
Power Edge Set and Zero Forcing Set Remain Difficult in Cubic Graphs.
IWOCA
Pierre Cazals, Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
2019 C conf
Weighted Minimum-Length Rearrangement Scenarios.
WABI
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
2018 — conf
A General Framework for Genome Rearrangement with Biological Constraints.
RECOMB-CG
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
2018 J jnl
A framework for cost-constrained genome rearrangement under Double Cut and Join.
CoRR
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
2018 J jnl
Complexity and lowers bounds for Power Edge Set Problem.
J. Discrete Algorithms
Benoît Darties, Nicolas Champseix, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
2018 C conf
New Results About the Linearization of Scaffolds Sharing Repeated Contigs.
COCOA
Dorine Tabary, Tom Davot, Mathias Weller, Annie Chateau, Rodolphe Giroudeau
2018 J jnl
On residual approximation in solution extension problems.
J. Comb. Optim.
Mathias Weller, Annie Chateau, Rodolphe Giroudeau, Jean-Claude König, Valentin Pollet
2018 — conf
On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigs.
RECOMB-CG
Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
2018 J jnl
Scaffolding Problems Revisited: Complexity, Approximation and Fixed Parameter Tractable Algorithms, and Some Special Cases.
Algorithmica
Mathias Weller, Annie Chateau, Clément Dallard, Rodolphe Giroudeau
2017 C conf
Improved Complexity for Power Edge Set Problem.
IWOCA
Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
2017 — conf
New Insights for Power Edge Set Problem.
COCOA (1)
Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
2017 — conf
On the Linearization of Scaffolds Sharing Repeated Contigs.
COCOA (2)
Mathias Weller, Annie Chateau, Rodolphe Giroudeau
2016 C conf
A Model-Driven Approach to Generate Relevant and Realistic Datasets.
SEKE
Adel Ferdjoukh, Eric Bourreau, Annie Chateau, Clémentine Nebut
2016 J jnl
Aligning the unalignable: bacteriophage whole genome alignments.
BMC Bioinform.
Sèverine Bérard, Annie Chateau, Nicolas Pompidor, Paul Guertin, Anne Bergeron, Krister M. Swenson
2016 C conf
Instance Guaranteed Ratio on Greedy Heuristic for Genome Scaffolding.
COCOA
Clément Dallard, Mathias Weller, Annie Chateau, Rodolphe Giroudeau
2016 C conf
On Residual Approximation in Solution Extension Problems.
COCOA
Mathias Weller, Annie Chateau, Rodolphe Giroudeau, Jean-Claude König, Valentin Pollet
2015 J jnl
A complexity and approximation framework for the maximization scaffolding problem.
Theor. Comput. Sci.
Annie Chateau, Rodolphe Giroudeau
2015 J jnl
Exact approaches for scaffolding.
BMC Bioinform.
Mathias Weller, Annie Chateau, Rodolphe Giroudeau
2015 C conf
Instantiation of Meta-models Constrained with OCL - A CSP Approach.
MODELSWARD
Adel Ferdjoukh, Anne-Elisabeth Baert, Eric Bourreau, Annie Chateau, Remi Coletta, Clémentine Nebut
2015 C conf
On the Complexity of Scaffolding Problems: From Cliques to Sparse Graphs.
COCOA
Mathias Weller, Annie Chateau, Rodolphe Giroudeau
2014 — conf
Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem.
AlCoB
Annie Chateau, Rodolphe Giroudeau
2013 B conf
A CSP Approach for Metamodel Instantiation.
ICTAI
Adel Ferdjoukh, Anne-Elisabeth Baert, Annie Chateau, Remi Coletta, Clémentine Nebut
2011 — conf
Approximate Common Intervals in Multiple Genome Comparison.
BIBM
Annie Chateau, Pierre Riou, Eric Rivals
2009 J jnl
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes.
J. Comput. Biol.
Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier
2008 — conf
Perfect DCJ Rearrangement.
RECOMB-CG
Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier
2007 B conf
Exploring Genome Rearrangements using Virtual Hybridization.
APBC
Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cédric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette
2006 — conf
Inferring Positional Homologs with Common Intervals of Sequences.
Comparative Genomics
Guillaume Blin, Annie Chateau, Cédric Chauve, Yannick Gingras
2006 J jnl
The ultra-weak Ash conjecture and some particular cases.
Math. Log. Q.
Annie Chateau, Malika More
2004 J jnl
On the complexity of decision using destinies in H-bounded structures.
Theor. Comput. Sci.
Annie Chateau
2004 C conf
Reconstructing Ancestral Gene Orders Using Conserved Intervals.
WABI
Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cédric Chauve
2003 — —
Utilisation des destinées pour la décision et sa complexité dans le cas de formules à profondeur de quantification bornée sur des structures logiques finies et infinies. (Using Destinies for the Decision Problem of Sets of Bounded Quantifier Depth Sentences in Finite or Infinite Structures).
Annie Chateau