Anne Shiu

30 papers Journal 27Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Identifiability of Directed-Cycle and Catenary Linear Compartmental Models.
SIAM J. Appl. Dyn. Syst.
Saber Ahmed, Natasha Crepeau, Paul r. Dessauer, Alexis Edozie, Odalys Garcia-Lopez, Tanisha Grimsley, Jordy Lopez Garcia, Viridiana Neri, Anne Shiu
2025 J jnl
Absolute concentration robustness: Algebra and geometry.
J. Symb. Comput.
Luis David García-Puente, Elizabeth Gross, Heather A. Harrington, Matthew D. Johnston, Nicolette Meshkat, Mercedes Pérez Millán, Anne Shiu
2024 J jnl
On the connectedness of multistationarity regions of small reaction networks.
J. Symb. Comput.
Allison McClure, Anne Shiu
2023 J jnl
Identifiability of linear compartmental tree models and a general formula for input-output equations.
Adv. Appl. Math.
Cashous Bortner, Elizabeth Gross, Nicolette Meshkat, Anne Shiu, Seth Sullivant
2023 J jnl
Nondegenerate Neural Codes and Obstructions to Closed-Convexity.
SIAM J. Discret. Math.
Patrick Chan, Katherine Johnston, Joseph Lent, Alexander Ruys de Perez, Anne Shiu
2023 J jnl
Prevalence of Multistationarity and Absolute Concentration Robustness in Reaction Networks.
SIAM J. Appl. Math.
Badal Joshi, Nidhi Kaihnsa, Tung D. Nguyen, Anne Shiu
2023 J jnl
Wheels: A new criterion for non-convexity of neural codes.
Adv. Appl. Math.
Alexander Ruys de Perez, Laura Felicia Matusevich, Anne Shiu
2022 J jnl
Identifiability of linear compartmental models: The singular locus.
Adv. Appl. Math.
Elizabeth Gross, Nicolette Meshkat, Anne Shiu
2020 J jnl
Neural codes and the factor complex.
Adv. Appl. Math.
Alexander Ruys de Perez, Laura Felicia Matusevich, Anne Shiu
2019 J jnl
Linear Compartmental Models: Input-Output Equations and Operations That Preserve Identifiability.
SIAM J. Appl. Math.
Elizabeth Gross, Heather A. Harrington, Nicolette Meshkat, Anne Shiu
2019 J jnl
Neural Codes, Decidability, and a New Local Obstruction to Convexity.
SIAM J. Appl. Algebra Geom.
Aaron Chen, Florian Frick, Anne Shiu
2018 J jnl
Algebraic signatures of convex and non-convex codes.
CoRR
Carina Curto, Elizabeth Gross, Jack Jeffries, Katherine Morrison, Zvi Rosen, Anne Shiu, Nora Youngs
2018 J jnl
Gröbner bases of neural ideals.
Int. J. Algebra Comput.
Rebecca Garcia, Luis David García-Puente, Ryan Kruse, Jessica Liu, Dane Miyata, Ethan Petersen, Kaitlyn Phillipson, Anne Shiu
2018 J jnl
Neural codes, decidability, and a new local obstruction to convexity.
CoRR
Aaron Chen, Florian Frick, Anne Shiu
2017 J jnl
Obstructions to convexity in neural codes.
Adv. Appl. Math.
Caitlin Lienkaemper, Anne Shiu, Zev Woodstock
2017 J jnl
What Makes a Neural Code Convex?
SIAM J. Appl. Algebra Geom.
Carina Curto, Elizabeth Gross, Jack Jeffries, Katherine Morrison, Mohamed Omar, Zvi Rosen, Anne Shiu, Nora Youngs
2017 J jnl
Which Small Reaction Networks Are Multistationary?
SIAM J. Appl. Dyn. Syst.
Badal Joshi, Anne Shiu
2016 J jnl
Analyzing multistationarity in chemical reaction networks using the determinant optimization method.
Appl. Math. Comput.
Bryan Félix, Anne Shiu, Zev Woodstock
2016 J jnl
Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry.
Found. Comput. Math.
Stefan Müller, Elisenda Feliu, Georg Regensburger, Carsten Conradi, Anne Shiu, Alicia Dickenstein
2014 J jnl
A Geometric Approach to the Global Attractor Conjecture.
SIAM J. Appl. Dyn. Syst.
Manoj Gopalkrishnan, Ezra Miller, Anne Shiu
2012 J jnl
A projection argument for differential inclusions, with applications to persistence of mass-action kinetics
CoRR
Manoj Gopalkrishnan, Ezra Miller, Anne Shiu
2012 J jnl
Simplifying the Jacobian Criterion for Precluding Multistationarity in Chemical Reaction Networks.
SIAM J. Appl. Math.
Badal Joshi, Anne Shiu
2012 J jnl
Symbolic Methods for Chemical Reaction Networks (Dagstuhl Seminar 12462).
Dagstuhl Reports
François Boulier, Anne Shiu, Thomas Sturm, Andreas Weber
2010 — —
Algebraic methods for biochemical reaction network theory.
Anne Shiu
2010 J jnl
The Dynamics of Weakly Reversible Population Processes near Facets.
SIAM J. Appl. Math.
David F. Anderson, Anne Shiu
2009 J jnl
Convex Rank Tests and Semigraphoids.
SIAM J. Discret. Math.
Jason Morton, Lior Pachter, Anne Shiu, Bernd Sturmfels, Oliver Wienand
2009 J jnl
Toric dynamical systems.
J. Symb. Comput.
Gheorghe Craciun, Alicia Dickenstein, Anne Shiu, Bernd Sturmfels
2008 — conf
The Smallest Multistationary Mass-Preserving Chemical Reaction Network.
AB
Anne Shiu
2008 J jnl
Three Counter-Examples on Semi-Graphoids.
Comb. Probab. Comput.
Raymond Hemmecke, Jason Morton, Anne Shiu, Bernd Sturmfels, Oliver Wienand
2006 — conf
Geometry of rank tests.
Probabilistic Graphical Models
Jason Morton, Lior Pachter, Anne Shiu, Bernd Sturmfels, Oliver Wienand