Anne Cori

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
AgentSLR: Automating Systematic Literature Reviews in Epidemiology with Agentic AI.
CoRR
Shreyansh Padarha, Ryan Othniel Kearns, Tristan Naidoo, Lingyi Yang, Lukasz Borchmann, Piotr Blaszczyk, Christian Morgenstern, Ruth McCabe, Sangeeta Bhatia, Philip Torr, Jakob N. Foerster, Scott A. Hale, Thomas Rawson, Anne Cori, Elizaveta Semenova, Adam Mahdi
2024 J jnl
Best practices for estimating and reporting epidemiological delay distributions of infectious diseases.
PLoS Comput. Biol.
Kelly Charniga, Sang Woo Park, Andrei R. Akhmetzhanov, Anne Cori, Jonathan Dushoff, Sebastian Funk, Katelyn M. Gostic, Natalie M. Linton, Adrian Lison, Christopher E. Overton, Juliet R. C. Pulliam, Thomas Ward, Simon Cauchemez, Sam Abbott
2024 J jnl
The impact of health inequity on spatial variation of COVID-19 transmission in England.
PLoS Comput. Biol.
Thomas Rawson, Wes Hinsley, Raphael Sonabend, Elizaveta Semenova, Anne Cori, Neil M. Ferguson
2023 J jnl
Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool.
PLoS Comput. Biol.
Rebecca K. Nash, Samir Bhatt, Anne Cori, Pierre Nouvellet
2023 J jnl
Scoring epidemiological forecasts on transformed scales.
PLoS Comput. Biol.
Nikos I. Bosse, Sam Abbott, Anne Cori, Edwin van Leeuwen, Johannes Bracher, Sebastian Funk
2022 J jnl
Comparing human and model-based forecasts of COVID-19 in Germany and Poland.
PLoS Comput. Biol.
Nikos I. Bosse, Sam Abbott, Johannes Bracher, Habakuk Hain, Billy J. Quilty, Mark Jit, Edwin van Leeuwen, Anne Cori, Sebastian Funk
2021 J jnl
PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial.
PLoS Comput. Biol.
Michael Pickles, Anne Cori, William J. M. Probert, Rafael Sauter, Robert Hinch, Sarah Fidler, Helen Ayles, Peter Bock, Deborah Donnell, Ethan Wilson, Estelle Piwowar-Manning, Sian Floyd, Richard J. Hayes, Christophe Fraser, HPTN 071 (PopART) Study Team
2021 J jnl
Using digital surveillance tools for near real-time mapping of the risk of infectious disease spread.
npj Digit. Medicine
Sangeeta Bhatia, Britta Lassmann, Emily Cohn, Angel N. Desai, Malwina Carrion, Moritz U. G. Kraemer, Mark Herringer, John S. Brownstein, Lawrence C. Madoff, Anne Cori, Pierre Nouvellet
2019 J jnl
Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data.
PLoS Comput. Biol.
Finlay Campbell, Anne Cori, Neil M. Ferguson, Thibaut Jombart
2018 J jnl
A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies.
PLoS Comput. Biol.
Anne Cori, Pierre Nouvellet, Tini Garske, Hervé Bourhy, Emmanuel Nakouné, Thibaut Jombart
2018 J jnl
outbreaker2: a modular platform for outbreak reconstruction.
BMC Bioinform.
Finlay Campbell, Xavier Didelot, Richard G. FitzJohn, Neil M. Ferguson, Anne Cori, Thibaut Jombart
2014 J jnl
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data.
PLoS Comput. Biol.
Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil M. Ferguson
2009 J jnl
Temporal Variability and Social Heterogeneity in Disease Transmission: The Case of SARS in Hong Kong.
PLoS Comput. Biol.
Anne Cori, Pierre-Yves Boëlle, Guy Thomas, Gabriel M. Leung, Alain-Jacques Valleron