Anne-Mieke Vandamme

17 papers Journal 14Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
A graph neural network-based model with out-of-distribution robustness for enhancing antiretroviral therapy outcome prediction for HIV-1.
Comput. Medical Imaging Graph.
Giulia Di Teodoro, Federico Siciliano, Valerio Guarrasi, Anne-Mieke Vandamme, Valeria Ghisetti, Anders Sönnerborg, Maurizio Zazzi, Fabrizio Silvestri, Laura Palagi
2023 J jnl
A graph neural network-based model with Out-of-Distribution Robustness for enhancing Antiretroviral Therapy Outcome Prediction for HIV-1.
CoRR
Giulia Di Teodoro, Federico Siciliano, Valerio Guarrasi, Anne-Mieke Vandamme, Valeria Ghisetti, Anders Sönnerborg, Maurizio Zazzi, Fabrizio Silvestri, Laura Palagi
2020 J jnl
Scenario-driven forecasting: modeling peaks and paths. Insights from the COVID-19 pandemic in Belgium.
Scientometrics
Kristof Decock, Koenraad Debackere, Anne-Mieke Vandamme, Bart Van Looy
2019 J jnl
Genome Detective: an automated system for virus identification from high-throughput sequencing data.
Bioinform.
Michael Vilsker, Yumna Moosa, Sam Nooij, Vagner Fonseca, Yoika Ghysens, Korneel Dumon, Raf Pauwels, Luiz Carlos Alcantara, Ewout Vanden Eynden, Anne-Mieke Vandamme, Koen Deforche, Tulio de Oliveira
2017 J jnl
PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.
Bioinform.
Pieter Libin, Ewout Vanden Eynden, Francesca Incardona, Ann Nowé, Antonia Bezenchek, EucoHIV Study Group, Anders Sönnerborg, Anne-Mieke Vandamme, Kristof Theys, Guy Baele
2014 J jnl
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.
PLoS Comput. Biol.
Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey
2013 — conf
Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.
IWBBIO
Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey
2013 J jnl
RegaDB: community-driven data management and analysis for infectious diseases.
Bioinform.
Pieter Libin, Gertjan Beheydt, Koen Deforche, Stijn Imbrechts, Fossie Ferreira, Kristel Van Laethem, Kristof Theys, Ana Patricia Carvalho, Joana Cavaco-Silva, Giuseppe Lapadula, Carlo Torti, Matthias Assel, Stefan Wesner, Joke Snoeck, Jean Ruelle, Annelies De Bel, Patrick Lacor, Paul De Munter, Eric Van Wijngaerden, Maurizio Zazzi, Rolf Kaiser, Ahidjo Ayouba, Martine Peeters, Tulio de Oliveira, Luiz Carlos Júnior Alcântara, Zehava Grossman, Peter M. A. Sloot, Dan Otelea, Simona Paraschiv, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme
2010 J jnl
Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape.
BMC Bioinform.
Kristof Theys, Koen Deforche, Gertjan Beheydt, Yves Moreau, Kristel Van Laethem, Philippe Lemey, Ricardo Camacho, Soo-Yon Rhee, Robert W. Shafer, Eric Van Wijngaerden, Anne-Mieke Vandamme
2009 — conf
A Collaborative Environment Allowing Clinical Investigations on Integrated Biomedical Databases.
HealthGrid
Matthias Assel, David A. van de Vijver, Pieter Libin, Kristof Theys, Daniel Harezlak, Breanndán Ó Nualláin, Piotr Nowakowski, Marian Bubak, Anne-Mieke Vandamme, Stijn Imbrechts, Raphael Sangeda, Tao Jiang, Dineke Frentz, Peter M. A. Sloot
2009 J jnl
A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.
Nucleic Acids Res.
Luiz Carlos Júnior Alcântara, Sharon Cassol, Pieter Libin, Koen Deforche, Oliver G. Pybus, Marc Van Ranst, Bernardo Galvão-Castro, Anne-Mieke Vandamme, Tulio de Oliveira
2008 J jnl
Estimation of an
Bioinform.
Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Philippe Lemey, Andrew Rambaut, Yves Moreau, Anne-Mieke Vandamme
2008 — conf
Multi-Science Decision Support for HIV Drug Resistance Treatment.
HealthGrid
Peter M. A. Sloot, Peter V. Coveney, Marian Bubak, Anne-Mieke Vandamme, Breanndán Ó Nualláin, David A. van de Vijver, Charles A. Boucher
2007 J jnl
Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution
J. Comput. Biol.
Koen Deforche, Ricardo Camacho, Kristel Van Laethem, Beth Shapiro, Yves Moreau, Andrew Rambaut, Anne-Mieke Vandamme, Philippe Lemey
2006 J jnl
Analysis of HIV-1
Bioinform.
Koen Deforche, Tomi Silander, Ricardo Camacho, Zehava Grossman, M. A. Soares, Kristel Van Laethem, Rami Kantor, Yves Moreau, Anne-Mieke Vandamme
2005 J jnl
An automated genotyping system for analysis of HIV-1 and other microbial sequences.
Bioinform.
Tulio de Oliveira, Koen Deforche, Sharon Cassol, Mika Salminen, Dimitris Paraskevis, Chris Seebregts, Joke Snoeck, Estrelita J. Janse van Rensburg, Annemarie M. J. Wensing, David A. van de Vijver, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme
2005 J jnl
SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
Bioinform.
Dimitris Paraskevis, Koen Deforche, Philippe Lemey, Gkikas Magiorkinis, Angelos Hatzakis, Anne-Mieke Vandamme