Anne-Florence Bitbol

17 papers Journal 17
YearRankTypeTitle / Venue / Authors
2025 J jnl
DiffPaSS - high-performance differentiable pairing of protein sequences using soft scores.
Bioinform.
Umberto Lupo, Damiano Sgarbossa, Martina Milighetti, Anne-Florence Bitbol
2025 J jnl
ProtMamba: a homology-aware but alignment-free protein state space model.
Bioinform.
Damiano Sgarbossa, Cyril Malbranke, Anne-Florence Bitbol
2025 J jnl
Spatial structure facilitates evolutionary rescue by drug resistance.
PLoS Comput. Biol.
Cecilia Fruet, Ella Linxia Müller, Claude Loverdo, Anne-Florence Bitbol
2024 J jnl
Could ChatGPT get an Engineering Degree? Evaluating Higher Education Vulnerability to AI Assistants.
CoRR
Beatriz Borges, Negar Foroutan, Deniz Bayazit, Anna Sotnikova, Syrielle Montariol, Tanya Nazaretzky, Mohammadreza Banaei, Alireza Sakhaeirad, Philippe Servant, Seyed Parsa Neshaei, Jibril Frej, Angelika Romanou, Gail Weiss, Sepideh Mamooler, Zeming Chen, Simin Fan, Silin Gao, Mete Ismayilzada, Debjit Paul, Alexandre Schöpfer, Andrej Janchevski, Anja Tiede, Clarence Linden, Emanuele Troiani, Francesco Salvi, Freya Behrens, Giacomo Orsi, Giovanni Piccioli, Hadrien Sevel, Louis Coulon, Manuela Pineros-Rodriguez, Marin Bonnassies, Pierre Hellich, Puck van Gerwen, Sankalp Gambhir, Solal Pirelli, Thomas Blanchard, Timothée Callens, Toni Abi Aoun, Yannick Calvino Alonso, Yuri Cho, Alberto Silvio Chiappa, Antonio Sclocchi, Étienne Bruno, Florian Hofhammer, Gabriel Pescia, Geovani Rizk, Leello Dadi, Lucas Stoffl, Manoel Horta Ribeiro, Matthieu Bovel, Yueyang Pan, Aleksandra Radenovic, Alexandre Alahi, Alexander Mathis, Anne-Florence Bitbol, Boi Faltings, Cécile Hébert, Devis Tuia, François Maréchal, George Candea, Giuseppe Carleo, Jean-Cédric Chappelier, Nicolas Flammarion, Jean-Marie Fürbringer, Jean-Philippe Pellet, Karl Aberer, Lenka Zdeborová, Marcel Salathé, Martin Jaggi, Martin Rajman, Mathias Payer, Matthieu Wyart, Michael Gastpar, Michele Ceriotti, Ola Svensson, Olivier Lévêque, Paolo Ienne, Rachid Guerraoui, Robert West, Sanidhya Kashyap, Valerio Piazza, Viesturs Simanis, Viktor Kuncak, Volkan Cevher, Philippe Schwaller, Sacha Friedli, Patrick Jermann, Tanja Käser, Antoine Bosselut
2024 J jnl
Impact of phylogeny on the inference of functional sectors from protein sequence data.
PLoS Comput. Biol.
Nicola Dietler, Alia Abbara, Subham Choudhury, Anne-Florence Bitbol
2024 J jnl
Machine Learning for Protein-Protein and Protein-Ligand Interactions (Dagstuhl Seminar 24451).
Dagstuhl Reports
Anne-Florence Bitbol, Jennifer Listgarten, Tomás Pluskal, Anton Bushuiev, Roman Bushuiev
2024 J jnl
Mutant fate in spatially structured populations on graphs: Connecting models to experiments.
PLoS Comput. Biol.
Alia Abbara, Lisa Pagani, Celia García-Pareja, Anne-Florence Bitbol
2023 J jnl
Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins.
PLoS Comput. Biol.
Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt
2023 J jnl
Pairing interacting protein sequences using masked language modeling.
CoRR
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
2022 J jnl
Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences.
PLoS Comput. Biol.
Andonis Gerardos, Nicola Dietler, Anne-Florence Bitbol
2022 J jnl
Generative power of a protein language model trained on multiple sequence alignments.
CoRR
Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol
2022 J jnl
Protein language models trained on multiple sequence alignments learn phylogenetic relationships.
CoRR
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
2020 J jnl
Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial.
PLoS Comput. Biol.
Loïc Marrec, Anne-Florence Bitbol
2019 J jnl
Phylogenetic correlations can suffice to infer protein partners from sequences.
PLoS Comput. Biol.
Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol
2019 J jnl
Revealing evolutionary constraints on proteins through sequence analysis.
PLoS Comput. Biol.
Shou-Wen Wang, Anne-Florence Bitbol, Ned S. Wingreen
2018 J jnl
Inferring interaction partners from protein sequences using mutual information.
PLoS Comput. Biol.
Anne-Florence Bitbol
2014 J jnl
Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes.
PLoS Comput. Biol.
Anne-Florence Bitbol, David J. Schwab