Annalisa Marsico

16 papers Journal 11Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
Random Walk Diffusion for Efficient Large-Scale Graph Generation.
Trans. Mach. Learn. Res.
Tobias Bernecker, Ghalia Rehawi, Francesco Paolo Casale, Janine Knauer-Arloth, Annalisa Marsico
2025 J jnl
TransFactor - prediction of pro-viral SARS-CoV-2 host factors using a protein language model.
Bioinform.
Yang An, Valter Bergant, Samuele Firmani, Corinna Grünke, Batiste Bonnal, Alexander Henrici, Andreas Pichlmair, Benjamin Schubert, Annalisa Marsico
2024 J jnl
Deep Learning for RNA Regulation and Multidimensional Transcriptomics (Dagstuhl Seminar 24491).
Dagstuhl Reports
Annalisa Marsico, Uwe Ohler, Igor Ulitsky, Kathi Zarnack, Charlotte Capitanchik
2024 J jnl
Random Walk Diffusion for Efficient Large-Scale Graph Generation.
CoRR
Tobias Bernecker, Ghalia Rehawi, Francesco Paolo Casale, Janine Knauer-Arloth, Annalisa Marsico
2023 J jnl
A systematic benchmark of machine learning methods for protein-RNA interaction prediction.
Briefings Bioinform.
Marc Horlacher, Giulia Cantini, Julian Hesse, Patrick Schinke, Nicolas Goedert, Shubhankar Londhe, Lambert Moyon, Annalisa Marsico
2021 J jnl
Integration of multiomics data with graph convolutional networks to identify new cancer genes and their associated molecular mechanisms.
Nat. Mach. Intell.
Roman Schulte-Sasse, Stefan Budach, Denes Hnisz, Annalisa Marsico
2019 — conf
Graph Convolutional Networks Improve the Prediction of Cancer Driver Genes.
ICANN (Workshop)
Roman Schulte-Sasse, Stefan Budach, Denes Hnisz, Annalisa Marsico
2019 J jnl
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis.
BMC Bioinform.
Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico
2018 J jnl
pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks.
Bioinform.
Stefan Budach, Annalisa Marsico
2010 J jnl
MeMotif: a database of linear motifs in α-helical transmembrane proteins.
Nucleic Acids Res.
Annalisa Marsico, Kerstin Scheubert, Anne Tuukkanen, Andreas Henschel, Christof Winter, Rainer Winnenburg, Michael Schroeder
2010 J jnl
Structural fragment clustering reveals novel structural and functional motifs in
BMC Bioinform.
Annalisa Marsico, Andreas Henschel, Christof Winter, Anne Tuukkanen, Boris Vassilev, Kerstin Scheubert, Michael Schroeder
2007 — conf
2D Visualisation of SMFS Data on Membrane Proteins.
ER (Tutorials, Posters, Panels & Industrial Contributions)
Annalisa Marsico, Kerstin Vanselow, Jing Wang, Dirk Labudde
2007 J jnl
A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy.
Bioinform.
Annalisa Marsico, Dirk Labudde, K. Tanuj Sapra, Daniel J. Muller, Michael Schroeder
2007 — conf
Pattern Recognition of Single-Molecule Force Spectroscopy Data.
ER Workshops
Dirk Labudde, Annalisa Marsico, K. Tanuj Sapra, Michael Schroeder
2007 — conf
Understanding of SMFS Barriers by Means of Energy Profiles.
German Conference on Bioinformatics
Frank Dressel, Annalisa Marsico, Anne Tuukkanen, Michael Schroeder, Dirk Labudde
2006 — conf
A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants.
CompLife
Annalisa Marsico, K. Tanuj Sapra, Daniel J. Muller, Michael Schroeder, Dirk Labudde