Anna Tramontano

34 papers C 1Journal 31Unranked 2
YearRankTypeTitle / Venue / Authors
2017 J jnl
PIGSPro: prediction of immunoGlobulin structures v2.
Nucleic Acids Res.
Rosalba Lepore, Pier Paolo Olimpieri, Mario Abdel Messih, Anna Tramontano
2016 J jnl
PepComposer: computational design of peptides binding to a given protein surface.
Nucleic Acids Res.
Agnieszka Obarska-Kosinska, Alfredo Iacoangeli, Rosalba Lepore, Anna Tramontano
2016 J jnl
Prediction of the permeability of neutral drugs inferred from their solvation properties.
Bioinform.
Edoardo Milanetti, Domenico Raimondo, Anna Tramontano
2015 J jnl
3USS: a web server for detecting alternative 3′UTRs from RNA-seq experiments.
Bioinform.
Loredana Le Pera, Mariagiovanna Mazzapioda, Anna Tramontano
2015 J jnl
LoopIng: a template-based tool for predicting the structure of protein loops.
Bioinform.
Mario Abdel Messih, Rosalba Lepore, Anna Tramontano
2015 J jnl
Tabhu: tools for antibody humanization.
Bioinform.
Pier Paolo Olimpieri, Paolo Marcatili, Anna Tramontano
2014 J jnl
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies.
Bioinform.
Mario Abdel Messih, Rosalba Lepore, Paolo Marcatili, Anna Tramontano
2013 J jnl
FIDEA: a server for the functional interpretation of differential expression analysis.
Nucleic Acids Res.
Daniel D'Andrea, Luigi Grassi, Mariagiovanna Mazzapioda, Anna Tramontano
2013 J jnl
MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships.
Bioinform.
Jan Kosinski, Alessandro Barbato, Anna Tramontano
2013 J jnl
Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server.
Bioinform.
Pier Paolo Olimpieri, Anna Chailyan, Anna Tramontano, Paolo Marcatili
2013 J jnl
ProCoCoA: A quantitative approach for analyzing protein core composition.
Comput. Biol. Chem.
Silvia Bottini, Andrea Bernini, Matteo De Chiara, Diego Garlaschelli, Ottavia Spiga, Marco Dioguardi, Elisa Vannuccini, Anna Tramontano, Neri Niccolai
2013 J jnl
TiPs: a database of therapeutic targets in pathogens and associated tools.
Bioinform.
Rosalba Lepore, Anna Tramontano, Allegra Via
2012 J jnl
A database of immunoglobulins with integrated tools: DIGIT.
Nucleic Acids Res.
Anna Chailyan, Anna Tramontano, Paolo Marcatili
2012 J jnl
A resource for benchmarking the usefulness of protein structure models.
BMC Bioinform.
Daniel Carbajo, Anna Tramontano
2012 J jnl
Improving your target-template alignment with MODalign.
Bioinform.
Alessandro Barbato, Pascal Benkert, Torsten Schwede, Anna Tramontano, Jan Kosinski
2011 J jnl
Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether.
J. Chem. Inf. Model.
Rosalba Lepore, Silvia Simeoni, Domenico Raimondo, Antonia Caroli, Anna Tramontano, Allegra Via
2011 J jnl
MAISTAS: a tool for automatic structural evaluation of alternative splicing products.
Bioinform.
Matteo Floris, Domenico Raimondo, Guido Leoni, Massimiliano Orsini, Paolo Marcatili, Anna Tramontano
2011 J jnl
Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.
Nucleic Acids Res.
Andreas Zanzoni, Daniel Carbajo, Francesca Diella, Pier Federico Gherardini, Anna Tramontano, Manuela Helmer-Citterich, Allegra Via
2011 J jnl
Ten Simple Rules for Developing a Short Bioinformatics Training Course.
PLoS Comput. Biol.
Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider
2010 J jnl
An automatic method for identifying surface proteins in bacteria: SLEP.
BMC Bioinform.
Emanuela Giombini, Massimiliano Orsini, Danilo Carrabino, Anna Tramontano
2010 J jnl
PICMI: mapping point mutations on genomes.
Bioinform.
Loredana Le Pera, Paolo Marcatili, Anna Tramontano
2010 — conf
Structural landscape of immunoglobulin lambda light chains.
BCB
Anna Chailyan, Davide Cirillo, Paolo Marcatili, Anna Tramontano
2009 J jnl
Editorial.
Bioinform.
Dan Gusfield, Anna Tramontano
2008 C conf
Editorial.
ECCB
Anna Tramontano
2008 J jnl
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.
BMC Bioinform.
Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich
2008 J jnl
PIGS: automatic prediction of antibody structures.
Bioinform.
Paolo Marcatili, Alessandra Rosi, Anna Tramontano
2008 J jnl
The MoVIN server for the analysis of protein interaction networks.
BMC Bioinform.
Paolo Marcatili, Giovanni Bussotti, Anna Tramontano
2007 J jnl
The MEPS server for identifying protein conformational epitopes.
BMC Bioinform.
Tiziana Castrignanò, Paolo D'Onorio De Meo, Danilo Carrabino, Massimiliano Orsini, Matteo Floris, Anna Tramontano
2006 J jnl
An analysis of the Sargasso Sea resource and the consequences for database composition.
BMC Bioinform.
Michael L. Tress, Domenico Cozzetto, Anna Tramontano, Alfonso Valencia
2006 J jnl
Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches.
Bioinform.
Marialuisa Pellegrini-Calace, Anna Tramontano
2006 J jnl
The PMDB Protein Model Database.
Nucleic Acids Res.
Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, Anna Tramontano
2005 — conf
Evaluating the usefulness of protein structure models for molecular replacement.
ECCB/JBI
Alejandro Giorgetti, Domenico Raimondo, Adriana Erica Miele, Anna Tramontano
2003 J jnl
Evaluation of annotation strategies using an entire genome sequence.
Bioinform.
Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis
1986 J jnl
Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics.
Nucleic Acids Res.
Anna Tramontano, M. F. Macchiato