Anna M. Ritz - RankMe

49 papers A 2Journal 26Unranked 20

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	CNB-MAC 2023 Special Issue. J. Comput. Biol. Anna M. Ritz
2024	J	`jnl`	Designing Contributing Guides to Facilitate Undergraduate Software Development Research. J. Comput. Sci. Coll. Anna M. Ritz, Oliver Anderson, Altaf Barelvi
2024	—	`conf`	Simplifying Signaling Pathway Reconstruction with Containerized Random Walk Algorithms. SIGCSE (2) Yancheng Liu, Anna M. Ritz
2024	J	`jnl`	Undergraduate Perceptions on Attending Interdisciplinary Conferences. J. Comput. Sci. Coll. Anna M. Ritz
2023	J	`jnl`	Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction Algorithms. J. Comput. Biol. Tunç Basar Köse, Jiarong Li, Anna M. Ritz
2023	J	`jnl`	Transformer Neural Networks for Protein Family and Interaction Prediction Tasks. J. Comput. Biol. Ananthan Nambiar, Simon Liu, Maeve Heflin, John Malcolm Forsyth, Sergei Maslov, Mark Hopkins, Anna M. Ritz
2022	—	`conf`	FiT: fiber-based tensor completion for drug repurposing. BCB Aysegul Bumin, Anna M. Ritz, Donna K. Slonim, Tamer Kahveci, Kejun Huang
2021	J	`jnl`	Graphery: interactive tutorials for biological network algorithms. Nucleic Acids Res. Heyuan Zeng, Jinbiao Zhang, Gabriel A. Preising, Tobias Rubel, Pramesh Singh, Anna M. Ritz
2021	J	`jnl`	Ten Simple Rules for Attending Your First Conference. CoRR Elizabeth Leininger, Kelly Shaw, Niema Moshiri, Kelly Neiles, Getiria Onsongo, Anna M. Ritz
2021	J	`jnl`	Ten simple rules for attending your first conference. PLoS Comput. Biol. Elizabeth Leininger, Kelly Shaw, Niema Moshiri, Kelly Neiles, Getiria Onsongo, Anna M. Ritz
2020	—	`conf`	A Protein-Protein Interactome for an African Cichlid. BCB Gabriel A. Preising, Joshua J. Faber-Hammond, Suzy C. P. Renn, Anna M. Ritz
2020	—	`conf`	Augmenting Signaling Pathway Reconstructions. BCB Tobias Rubel, Anna M. Ritz
2020	J	`jnl`	Distance measures for tumor evolutionary trees. Bioinform. Zach Dinardo, Kiran Tomlinson, Anna M. Ritz, Layla Oesper
2020	—	`conf`	Graphery: a Biological Network Algorithm Tutorial Webservice. BCB Heyuan Zeng, Anna M. Ritz
2020	—	`conf`	Lowering the Barrier for Undergraduates to Learn about Computational Research through a Course-Based Conference Experience. RESPECT Amy R. Lazarte, Anna M. Ritz
2020	J	`jnl`	MsPAC: a tool for haplotype-phased structural variant detection. Bioinform. Oscar L. Rodriguez, Anna M. Ritz, Andrew J. Sharp, Ali Bashir
2020	—	`conf`	Prefix/Suffix Variation in Retinoic Acid Response Elements. BCB Yuan Zhuang, Kara L. Cerveny, Anna M. Ritz
2020	J	`jnl`	Supporting and teaching students at liberal arts colleges in online courses. J. Comput. Sci. Coll. Haiyan Cheng, Shereen Kjoha, Anna M. Ritz, Tammy VanDeGrift
2020	—	`conf`	Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks. BCB Ananthan Nambiar, Maeve Heflin, Simon Liu, Sergei Maslov, Mark Hopkins, Anna M. Ritz
2019	—	`conf`	Factors Affecting Network-Based Gene Prediction Across Diverse Diseases. BIBM Alexander King, Ibrahim Youssef, Anna M. Ritz
2019	J	`jnl`	Hypergraph-based connectivity measures for signaling pathway topologies. PLoS Comput. Biol. Nicholas Franzese, Adam Groce, T. M. Murali, Anna M. Ritz
2019	J	`jnl`	Improved Differentially Private Analysis of Variance. CoRR Marika Swanberg, Ira Globus-Harris, Iris Griffith, Anna M. Ritz, Adam Groce, Andrew Bray
2019	J	`jnl`	Improved Differentially Private Analysis of Variance. Proc. Priv. Enhancing Technol. Marika Swanberg, Ira Globus-Harris, Iris Griffith, Anna M. Ritz, Adam Groce, Andrew Bray
2019	J	`jnl`	Integrating protein localization with automated signaling pathway reconstruction. BMC Bioinform. Ibrahim Youssef, Jeffrey N. Law, Anna M. Ritz
2019	—	`conf`	Modeling Phytoplankton Movement and Fitness in Lakes. BCB Amy R. Lazarte, Samuel B. Fey, Anna M. Ritz
2019	J	`jnl`	Network-based prediction of polygenic disease genes involved in cell motility. BMC Bioinform. Miriam Bern, Alexander King, Derek A. Applewhite, Anna M. Ritz
2018	—	`conf`	Differentially Private ANOVA Testing. ICDIS Zachary Campbell, Andrew Bray, Anna M. Ritz, Adam Groce
2018	—	`conf`	Integrating Protein Localization with Automated Signaling Pathway Reconstruction. BIBM Ibrahim Youssef, Jeffrey N. Law, Anna M. Ritz
2018	—	`conf`	Network-Based Prediction of Polygenic Disease Genes Involved in Cell Motility: Extended Abstract. BCB Miriam Bern, Alexander King, Derek A. Applewhite, Anna M. Ritz
2018	A	`conf`	Programming the Central Dogma: An Integrated Unit on Computer Science and Molecular Biology Concepts. SIGCSE Anna M. Ritz
2017	—	`conf`	Breaking Ties in Weighted Interactomes. BCB Ibrahim Youssef, Anna M. Ritz
2017	J	`jnl`	Differentially Private ANOVA Testing. CoRR Zachary Campbell, Andrew Bray, Anna M. Ritz, Adam Groce
2017	J	`jnl`	GraphSpace: stimulating interdisciplinary collaborations in network biology. Bioinform. Aditya Bharadwaj, Divit P. Singh, Anna M. Ritz, Allison N. Tegge, Christopher L. Poirel, Pavel K. Brazhnik, Neil Adames, Kurt Luther, Shiv D. Kale, Jean Peccoud, John J. Tyson, T. M. Murali
2017	J	`jnl`	Pathway Analysis with Signaling Hypergraphs. IEEE ACM Trans. Comput. Biol. Bioinform. Anna M. Ritz, Brendan Avent, T. M. Murali
2016	—	`conf`	Copy Number Variation and Adaptive Evolutionary Radiations across the African Cichlid phylogeny. BCB Karl Menzel, Suzy C. P. Renn, Anna M. Ritz
2016	—	`conf`	Modeling Cell Signaling Networks with Prize-Collecting Subhypernetworks. BCB Barney Potter, James D. Fix, Anna M. Ritz
2016	—	`conf`	Reconstructing Neuronal Signaling Pathways With the Potential for Disruption in Schizophrenia. BCB Nicole Ezell, Anna M. Ritz
2014	J	`jnl`	Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinform. Anna M. Ritz, Ali Bashir, Suzanne S. Sindi, David Hsu, Iman Hajirasouliha, Benjamin J. Raphael
2014	—	`conf`	GraphSpace: sharing and collaborating through networks on the web. BCB Craig Estep, Jaeil Yi, Anna M. Ritz, T. M. Murali
2014	—	`conf`	Pathway analysis with signaling hypergraphs. BCB Anna M. Ritz, T. M. Murali
2013	—	`—`	Algorithms for Identifying Structural Variants in Human Genomes. Anna M. Ritz
2012	J	`jnl`	Reconstructing cancer genomes from paired-end sequencing data. BMC Bioinform. Layla Oesper, Anna M. Ritz, Sarah J. Aerni, Ryan Drebin, Benjamin J. Raphael
2011	J	`jnl`	Detection of recurrent rearrangement breakpoints from copy number data. BMC Bioinform. Anna M. Ritz, Pamela L. Paris, Michael Ittmann, Colin C. Collins, Benjamin J. Raphael
2011	—	`conf`	Workshop: Characterization of structural variants with next generation DNA sequencing. ICCABS Benjamin J. Raphael, Suzanne S. Sindi, Anna M. Ritz, Ali Bashir
2010	J	`jnl`	Environmental chemistry through intelligent atmospheric data analysis. Environ. Model. Softw. Deborah S. Gross, Robert Atlas, Jeffrey Rzeszotarski, Emma Turetsky, Janara M. Christensen, Sami Benzaid, Jamie F. Olson, Thomas Smith, Leah E. Steinberg, Jon Sulman, Anna M. Ritz, Benjamin J. Anderson, Catherine Nelson, David R. Musicant, Lei Chen, David C. Snyder, James J. Schauer
2010	J	`jnl`	Gremlin: An Interactive Visualization Model for Analyzing Genomic Rearrangements. IEEE Trans. Vis. Comput. Graph. Trevor M. O'Brien, Anna M. Ritz, Benjamin J. Raphael, David H. Laidlaw
2010	J	`jnl`	Structural variation analysis with strobe reads. Bioinform. Anna M. Ritz, Ali Bashir, Benjamin J. Raphael
2009	J	`jnl`	Discovery of phosphorylation motif mixtures in phosphoproteomics data. Bioinform. Anna M. Ritz, Gregory Shakhnarovich, Arthur R. Salomon, Benjamin J. Raphael
2006	A	`conf`	Adapting K-Medians to Generate Normalized Cluster Centers. SDM Benjamin J. Anderson, Deborah S. Gross, David R. Musicant, Anna M. Ritz, Thomas G. Smith, Leah E. Steinberg