Anna Kreshuk - RankMe

39 papers A* 2Journal 26Unranked 10

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	IConE: Batch Independent Collapse Prevention for Self-Supervised Representation Learning. CoRR Konstantinos Almpanakis, Anna Kreshuk
2025	J	`jnl`	Ranking pre-trained segmentation models for zero-shot transferability. CoRR Joshua Talks, Anna Kreshuk
2025	J	`jnl`	Spherical harmonics texture extraction for versatile analysis of biological objects. PLoS Comput. Biol. Oane Gros, Josiah B. Passmore, Noa O. Borst, Dominik Kutra, Wilco Nijenhuis, Timothy Fuqua, Lukas C. Kapitein, Justin M. Crocker, Anna Kreshuk, Simone Köhler
2025	J	`jnl`	Tiling artifacts and trade-offs of feature normalization in the segmentation of large biological images. CoRR Elena Buglakova, Anwai Archit, Edoardo D'Imprima, Julia Mahamid, Constantin Pape, Anna Kreshuk
2024	J	`jnl`	How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities. CoRR Charlotte Bunne, Yusuf H. Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed, Theo Alexandrov, Mohammed AlQuraishi, Patricia Brennan, Daniel B. Burkhardt, Andrea Califano, Jonah Cool, Abby F. Dernburg, Kirsty Ewing, Emily B. Fox, Matthias Haury, Amy E. Herr, Eric Horvitz, Patrick D. Hsu, Viren Jain, Gregory R. Johnson, Thomas Kalil, David R. Kelley, Shana O. Kelley, Anna Kreshuk, Tim Mitchison, Stephani Otte, Jay Shendure, Nicolas J. Sofroniew, Fabian J. Theis, Christina V. Theodoris, Srigokul Upadhyayula, Marc Valer, Bo Wang, Eric Xing, Serena Yeung-Levy, Marinka Zitnik, Theofanis Karaletsos, Aviv Regev, Emma Lundberg, Jure Leskovec, Stephen R. Quake
2023	—	`conf`	Reinforcement learning for instance segmentation with high-level priors. ICCV (Workshops) Paul Hilt, Maedeh Zarvandi, Edgar Kaziakhmedov, Sourabh Bhide, Maria Leptin, Constantin Pape, Anna Kreshuk
2023	J	`jnl`	Understanding metric-related pitfalls in image analysis validation. CoRR Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein
2022	J	`jnl`	From Shallow to Deep: Exploiting Feature-Based Classifiers for Domain Adaptation in Semantic Segmentation. Frontiers Comput. Sci. Alex Matskevych, Adrian Wolny, Constantin Pape, Anna Kreshuk
2022	A*	`conf`	GASP, a generalized framework for agglomerative clustering of signed graphs and its application to Instance Segmentation. CVPR Alberto Bailoni, Constantin Pape, Nathan Hütsch, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht
2022	J	`jnl`	Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger
2022	A*	`conf`	Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. CVPR Adrian Wolny, Qin Yu, Constantin Pape, Anna Kreshuk
2021	J	`jnl`	Developing open-source software for bioimage analysis: opportunities and challenges. F1000Research Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase
2021	J	`jnl`	Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. CoRR Adrian Wolny, Qin Yu, Constantin Pape, Anna Kreshuk
2021	J	`jnl`	Stateless actor-critic for instance segmentation with high-level priors. CoRR Paul Hilt, Edgar Kaziakhmedov, Sourabh Bhide, Maria Leptin, Constantin Pape, Anna Kreshuk
2021	J	`jnl`	The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning. IEEE Trans. Pattern Anal. Mach. Intell. Steffen Wolf, Alberto Bailoni, Constantin Pape, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht
2020	—	`conf`	Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks. GCPR Alberto Bailoni, Constantin Pape, Steffen Wolf, Anna Kreshuk, Fred A. Hamprecht
2020	J	`jnl`	Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks. CoRR Alberto Bailoni, Constantin Pape, Steffen Wolf, Anna Kreshuk, Fred A. Hamprecht
2020	—	`conf`	The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. ECCV (6) Steffen Wolf, Yuyan Li, Constantin Pape, Alberto Bailoni, Anna Kreshuk, Fred A. Hamprecht
2019	J	`jnl`	A Generalized Framework for Agglomerative Clustering of Signed Graphs applied to Instance Segmentation. CoRR Alberto Bailoni, Constantin Pape, Steffen Wolf, Thorsten Beier, Anna Kreshuk, Fred A. Hamprecht
2019	—	`conf`	Domain Adaptive Segmentation In Volume Electron Microscopy Imaging. ISBI Joris Roels, Julian Hennies, Yvan Saeys, Wilfried Philips, Anna Kreshuk
2019	J	`jnl`	Leveraging Domain Knowledge to Improve Microscopy Image Segmentation With Lifted Multicuts. Frontiers Comput. Sci. Constantin Pape, Alex Matskevych, Adrian Wolny, Julian Hennies, Giulia Mizzon, Marion Louveaux, Jacob Musser, Alexis Maizel, Detlev Arendt, Anna Kreshuk
2019	J	`jnl`	Leveraging Domain Knowledge to improve EM image segmentation with Lifted Multicuts. CoRR Constantin Pape, Alex Matskevych, Julian Hennies, Anna Kreshuk
2019	J	`jnl`	QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers Neuroinformatics Sharon C. Yates, Nicolaas E. Groeneboom, Christopher Coello, Stefan F. Lichtenthaler, Peer-Hendrik Kuhn, Hans-Ulrich Demuth, Maike Hartlage-Rübsamen, Steffen Roßner, Trygve B. Leergaard, Anna Kreshuk, Maja A. Puchades, Jan G. Bjaalie
2019	—	`conf`	Synthetic Patches, Real Images: Screening for Centrosome Aberrations in EM Images of Human Cancer Cells. MICCAI (1) Artem Lukoyanov, Isabella Haberbosch, Constantin Pape, Alwin Krämer, Yannick Schwab, Anna Kreshuk
2019	J	`jnl`	Synthetic patches, real images: screening for centrosome aberrations in EM images of human cancer cells. CoRR Artem Lukoyanov, Isabella Haberbosch, Constantin Pape, Alwin Kraemer, Yannick Schwab, Anna Kreshuk
2019	J	`jnl`	The Mutex Watershed and its Objective: Efficient, Parameter-Free Image Partitioning. CoRR Steffen Wolf, Alberto Bailoni, Constantin Pape, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht
2019	J	`jnl`	The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. CoRR Steffen Wolf, Yuyan Li, Constantin Pape, Alberto Bailoni, Anna Kreshuk, Fred A. Hamprecht
2018	J	`jnl`	Domain Adaptive Segmentation in Volume Electron Microscopy Imaging. CoRR Joris Roels, Julian Hennies, Yvan Saeys, Wilfried Philips, Anna Kreshuk
2018	J	`jnl`	Neuron Segmentation With High-Level Biological Priors. IEEE Trans. Medical Imaging Nikola Krasowski, Thorsten Beier, Graham Knott, Ullrich Köthe, Fred A. Hamprecht, Anna Kreshuk
2018	—	`conf`	The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. ECCV (4) Steffen Wolf, Constantin Pape, Alberto Bailoni, Nasim Rahaman, Anna Kreshuk, Ullrich Köthe, Fred A. Hamprecht
2017	—	`conf`	Solving Large Multicut Problems for Connectomics via Domain Decomposition. ICCV Workshops Constantin Pape, Thorsten Beier, Peter Li, Viren Jain, Davi D. Bock, Anna Kreshuk
2015	—	`conf`	Improving 3D EM data segmentation by joint optimization over boundary evidence and biological priors. ISBI Nikola Krasowski, Thorsten Beier, Graham W. Knott, Ullrich Köthe, Fred A. Hamprecht, Anna Kreshuk
2015	J	`jnl`	ROOT - A C++ Framework for Petabyte Data Storage, Statistical Analysis and Visualization. CoRR Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta, Axel Naumann, Eddy Offermann, Valeriy Onuchin, Suzanne Panacek, Fons Rademakers, Paul Russo, Matevz Tadel
2015	—	`conf`	Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain. MICCAI (1) Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht
2012	—	`—`	Automated Analysis of Biomedical Data from Low to High Resolution Anna Kreshuk
2011	—	`conf`	Automated segmentation of synapses in 3D EM data. ISBI Anna Kreshuk, Christoph N. Straehle, Christoph Sommer, Ullrich Köthe, Graham Knott, Fred A. Hamprecht
2011	J	`jnl`	ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization. Comput. Phys. Commun. Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta, Axel Naumann
2009	J	`jnl`	Developments in ROOT I/O and trees CoRR Rene Brun, Philippe Canal, Mario Frank, Anna Kreshuk, S. Linev, Paul Russo, Fons Rademakers
2009	J	`jnl`	ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization. Comput. Phys. Commun. Ilka Antcheva, Maarten Ballintijn, Bertrand Bellenot, Marek Biskup, Rene Brun, Nenad Buncic, Philippe Canal, Diego Casadei, Olivier Couet, Valery Fine, Leandro Franco, Gerardo Ganis, Andrei Gheata, David González Maline, Masaharu Goto, Jan Iwaszkiewicz, Anna Kreshuk, Diego Marcos Segura, Richard Maunder, Lorenzo Moneta