Anjun Ma

18 papers Journal 17Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
A weighted two-stage sequence alignment framework to identify motifs from ChIP-exo data.
Patterns
Yang Li, Yizhong Wang, Cankun Wang, Anjun Ma, Qin Ma, Bingqiang Liu
2024 J jnl
Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data.
Briefings Bioinform.
Yang Li, Anjun Ma, Yizhong Wang, Qi Guo, Cankun Wang, Hongjun Fu, Bingqiang Liu, Qin Ma
2023 J jnl
Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data.
Comput. Biol. Medicine
Zhaoqian Liu, Qi Wang, Anjun Ma, Shaohong Feng, Dongjun Chung, Jing Zhao, Qin Ma, Bingqiang Liu
2022 J jnl
Assessing deep learning methods in cis-regulatory motif finding based on genomic sequencing data.
Briefings Bioinform.
Shuangquan Zhang, Anjun Ma, Jing Zhao, Dong Xu, Qin Ma, Yan Wang
2022 J jnl
MMGraph: a multiple motif predictor based on graph neural network and coexisting probability for ATAC-seq data.
Bioinform.
Shuangquan Zhang, Lili Yang, Xiaotian Wu, Nan Sheng, Yuan Fu, Anjun Ma, Yan Wang
2022 — conf
Machine learning development environment for single-cell sequencing data analyses.
BIBM
Lei Jiang, Yuexu Jiang, Cankun Wang, Clement Essien, Juexin Wang, Anjun Ma, Qin Ma, Dong Xu
2022 J jnl
scGNN 2.0: a graph neural network tool for imputation and clustering of single-cell RNA-Seq data.
Bioinform.
Haocheng Gu, Hao Cheng, Anjun Ma, Yang Li, Juexin Wang, Dong Xu, Qin Ma
2021 J jnl
Network analyses in microbiome based on high-throughput multi-omics data.
Briefings Bioinform.
Zhaoqian Liu, Anjun Ma, Ewy A. Mathé, Marlena Merling, Qin Ma, Bingqiang Liu
2021 J jnl
Prediction of protein-protein interactions based on elastic net and deep forest.
Expert Syst. Appl.
Bin Yu, Cheng Chen, Xiaolin Wang, Zhaomin Yu, Anjun Ma, Bingqiang Liu
2021 J jnl
scGMAI: a Gaussian mixture model for clustering single-cell RNA-Seq data based on deep autoencoder.
Briefings Bioinform.
Bin Yu, Cheng Chen, Ren Qi, Ruiqing Zheng, Patrick J. Skillman-Lawrence, Xiaolin Wang, Anjun Ma, Haiming Gu
2020 J jnl
Clustering and classification methods for single-cell RNA-sequencing data.
Briefings Bioinform.
Ren Qi, Anjun Ma, Qin Ma, Quan Zou
2020 J jnl
IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq.
Nucleic Acids Res.
Anjun Ma, Cankun Wang, Yuzhou Chang, Faith H. Brennan, Adam McDermaid, Bingqiang Liu, Chi Zhang, Phillip G. Popovich, Qin Ma
2020 J jnl
QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data.
Bioinform.
Juan Xie, Anjun Ma, Yu Zhang, Bingqiang Liu, Sha Cao, Cankun Wang, Jennifer Xu, Chi Zhang, Qin Ma
2020 J jnl
SubMito-XGBoost: predicting protein submitochondrial localization by fusing multiple feature information and eXtreme gradient boosting.
Bioinform.
Bin Yu, Wenying Qiu, Cheng Chen, Anjun Ma, Jing Jiang, Hongyan Zhou, Qin Ma
2019 J jnl
It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data.
Briefings Bioinform.
Juan Xie, Anjun Ma, Anne Fennell, Qin Ma, Jing Zhao
2019 J jnl
MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.
Bioinform.
Anjun Ma, Minxuan Sun, Adam McDermaid, Bingqiang Liu, Qin Ma
2019 J jnl
MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.
Bioinform.
Anjun Ma, Minxuan Sun, Adam McDermaid, Bingqiang Liu, Qin Ma
2019 J jnl
Protein-protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique.
Bioinform.
Xiaoying Wang, Bin Yu, Anjun Ma, Cheng Chen, Bingqiang Liu, Qin Ma