Anita Burgun - RankMe

151 papers B 1C 4Misc 16Journal 59Unranked 71

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Active learning for extracting rare adverse events from electronic health records: A study in pediatric cardiology. Int. J. Medical Informatics Sophie Quennelle, Sophie Malekzadeh-Milani, Nicolas Garcelon, Hassan Faour, Anita Burgun, Carole Faviez, Rosy Tsopra, Damien Bonnet, Antoine Neuraz
2025	—	`conf`	Can Generative LLMs Help Classify Imbalanced Real-World Data? Exploring Rare Diseases on Social Media. MedInfo Emma Le Priol, Juliette Potier, Anita Burgun
2025	J	`jnl`	Enhancing clinical data warehousing with provenance data to support longitudinal analyses and large file management: The gitOmmix approach for genomic and image data. J. Biomed. Informatics Maxime Wack, Adrien Coulet, Anita Burgun, Bastien Rance
2025	J	`jnl`	Enhancing rare disease detection with deep phenotyping from EHR narratives: evaluation on Jeune syndrome. Int. J. Medical Informatics Carole Faviez, Xiaomeng Wang, Marc Vincent, Nicolas Garcelon, Sophie Saunier, Valerie Cormier-Daire, Xiaoyi Chen, Anita Burgun
2025	J	`jnl`	Enhancing security in patient medical information exchange: A qualitative study. Int. J. Medical Informatics Aurélia Manns, Thomas Pezziardi, Natacha Kadlub, Anita Burgun, Alban Destrez, Rosy Tsopra
2025	J	`jnl`	PED-IA, a CDSS to support decision in pediatrics telephone triage: a crossover evaluation. Comput. Biol. Medicine Aurélia Manns, Alix Millet, Fleur Mougin, Florence Campeotto, Benoît Vivien, Laurent Dupic, Anita Burgun, Jean Philippe Jaïs, Rosy Tsopra
2025	J	`jnl`	Real-life implementation and evaluation of the e-referral system SIPILINK. Int. J. Medical Informatics Aimé Nun, Anne-Isabelle Tropeano, Edouard Flamarion, Arnaud Roumy, Henri Azais, Léa Dehghani Kelishadi, Edouard Auclin, Anita Burgun, Sandrine Katsahian, Brigitte Ranque, Marie Hélène Metzger, Rosy Tsopra
2025	J	`jnl`	Spectral structure learning for clinical time series. CoRR Ivan Lerner, Anita Burgun, Francis Bach
2025	J	`jnl`	Towards a decision support system for pediatric emergency telephone triage. Int. J. Medical Informatics Aurélia Manns, Alix Millet, Florence Campeotto, Benoît Vivien, Laurent Dupic, Olivier Guillard, Christelle El Hage, Florence Castela, Stephanie Fogel, Anita Burgun, Fleur Mougin, Rosy Tsopra
2024	—	`conf`	An Integrated Pipeline for Phenotypic Characterization, Clustering and Visualization of Patient Cohorts in a Rare Disease-Oriented Clinical Data Warehouse. MIE Xiaoyi Chen, Junyuan Wang, Carole Faviez, Xiaomeng Wang, Marc Vincent, Rosy Tsopra, Anita Burgun, Nicolas Garcelon
2024	J	`jnl`	Building ontology-based temporal databases for data reuse: An applied example on hospital organizational structures. Health Informatics J. Christina Khnaisser, Vincent Looten, Luc Lavoie, Anita Burgun, Jean-François Ethier
2024	J	`jnl`	Clinical decision support system in emergency telephone triage: A scoping review of technical design, implementation and evaluation. Int. J. Medical Informatics Julie Michel, Aurélia Manns, Sofia Boudersa, Côme Jaubert, Laurent Dupic, Benoît Vivien, Anita Burgun, Florence Campeotto, Rosy Tsopra
2024	—	`conf`	Evaluation of BERT-Based Models on Patient Data from French Social Media. MIE Manissa Talmatkadi, Stéphane Schück, Nathalie Texier, Anita Burgun
2024	J	`jnl`	Objectivizing issues in the diagnosis of complex rare diseases: lessons learned from testing existing diagnosis support systems on ciliopathies. BMC Medical Informatics Decis. Mak. Carole Faviez, Xiaoyi Chen, Nicolas Garcelon, Mohamad Zaidan, Katy Billot, Friederike Petzold, Hassan Faour, Maxime Douillet, Jean-Michel Rozet, Valerie Cormier-Daire, Tania Attié-Bitach, Stanislas Lyonnet, Sophie Saunier, Anita Burgun
2023	—	`conf`	Improving Patient Similarity Using Different Modalities of Phenotypes Extracted from Clinical Narratives. MIE Xiaoyi Chen, Carole Faviez, Marc Vincent, Sophie Saunier, Nicolas Garcelon, Anita Burgun
2023	J	`jnl`	Putting undergraduate medical students in AI-CDSS designers' shoes: An innovative teaching method to develop digital health critical thinking. Int. J. Medical Informatics Rosy Tsopra, Nathan Peiffer-Smadja, Caroline Charlier, Florence Campeotto, Cédric Lemogne, Philippe Ruszniewski, Benoît Vivien, Anita Burgun
2023	—	`conf`	The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. MIE Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Antoine Neuraz, Anita Burgun, Nicolas Garcelon
2023	J	`jnl`	The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. CoRR Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Anita Burgun, Antoine Neuraz, Nicolas Garcelon
2022	—	`conf`	An Interactive Interface for Displaying Recommendations on Emergency Phone Triage in Pediatrics. MIE Claire Durchon, Stephi Vanderlan, Alice Jegard, Hasini Saram, Marina Falchi, Florence Campeotto, Laurent Dupic, Anita Burgun, Benoît Vivien, Rosy Tsopra
2022	—	`conf`	An analogy based framework for patient-stay identification in healthcare. ICCBR Workshops Safa Alsaidi, Miguel Couceiro, Esteban Marquer, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet
2022	—	`conf`	Determining the Set of Items to Include in Breast Operative Reports, Using Clustering Algorithms on Retrospective Data Extracted from Clinical DataWarehouse. ICIMTH Adrien Boukobza, Maxime Wack, Antoine Neuraz, Daniela Geromin, Cécile Badoual, Anne-Sophie Bats, Anita Burgun, Meriem Koual, Rosy Tsopra
2022	—	`conf`	Enriching UMLS-Based Phenotyping of Rare Diseases Using Deep-Learning: Evaluation on Jeune Syndrome. MIE Carole Faviez, Marc Vincent, Nicolas Garcelon, Caroline Michot, Geneviève Baujat, Valerie Cormier-Daire, Sophie Saunier, Xiaoyi Chen, Anita Burgun
2022	—	`conf`	Exploring Analogical Inference in Healthcare. IARML@IJCAI Safa Alsaidi, Miguel Couceiro, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet
2022	—	`conf`	Towards a Clinical Decision Support System for Helping Medical Students in Emergency Call Centers. MIE Edouard Michot, Jules Woo, Louis Mouline, Catherine Sinnappan, Adrien Boukobza, Florence Campeotto, Laurent Dupic, Anita Burgun, Benoît Vivien, Rosy Tsopra
2022	—	`conf`	viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome. MIE Maxime Wack, David Veyer, Camille Peneau, Sonia Lameiras, William Digan, Alain Nicolas, Jessica Zucman-Rossi, Sandrine Imbeaud, Anita Burgun, Hélène Péré, Bastien Rance
2021	—	`conf`	A COVID-19 Decision Support System for Phone Call Triage, Designed by and for Medical Students. MIE Jean-Patrick Vrel, Samy Oulmane, Adrien Boukobza, Anita Burgun, Rosy Tsopra
2021	J	`jnl`	A framework for validating AI in precision medicine: considerations from the European ITFoC consortium. BMC Medical Informatics Decis. Mak. Rosy Tsopra, Xosé M. Fernández, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, Osman Ugur Sezerman, Marc Cuggia, Marie de Tayrac, Edvins Miklasevics, Lucian Mihai Itu, Marius Geanta, Lesley Ogilvie, Florence Godey, Cristian Nicolae Boldisor, Boris Campillo-Gimenez, Cosmina Cioroboiu, Costin Florian Ciusdel, Simona Coman, Oliver Hijano Cubelos, Alina Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri, H. Okan Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli, Christoph Wierling, Nora Benhabiles, Anita Burgun
2021	Misc	`conf`	Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. AMIA William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance
2021	J	`jnl`	Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. J. Am. Medical Informatics Assoc. William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance
2021	—	`conf`	Design of an Ontology-Based Triage System for Patients with Chronic Pain. MedInfo Alexandre Saadi, Alice Rogier, Anita Burgun, Rosy Tsopra
2021	—	`conf`	Fuzzy Matching for Symptom Detection in Tweets: Application to Covid-19 During the First Wave of the Pandemic in France. MIE Carole Faviez, Pierre Foulquié, Xiaoyi Chen, Adel Mebarki, Sophie Quennelle, Nathalie Texier, Sandrine Katsahian, Stéphane Schück, Anita Burgun
2021	—	`conf`	Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis. MIE Xiaoyi Chen, Carole Faviez, Marc Vincent, Nicolas Garcelon, Sophie Saunier, Anita Burgun
2021	—	`conf`	Using Deep Learning to Improve Phenotyping from Clinical Reports. MedInfo Marc Vincent, Maxime Douillet, Ivan Lerner, Antoine Neuraz, Anita Burgun, Nicolas Garcelon
2020	J	`jnl`	International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. npj Digit. Medicine Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James J. Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L'Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutiérrez-Sacristán, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie G. Kirchoff, Jean B. Craig, Jihad S. Obeid, Vianney Jouhet, Romain Griffier, Sébastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans-Ulrich Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schriver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne-Sophie Jannot, Stéphane Bréant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Mélodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Estève, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gaël Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew M. South, Tianxi Cai, Isaac S. Kohane
2020	J	`jnl`	Learning the grammar of prescription: recurrent neural network grammars for medication information extraction in clinical texts. CoRR Ivan Lerner, Jordan Jouffroy, Anita Burgun, Antoine Neuraz
2020	—	`conf`	The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding. MIE Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2019	—	`conf`	Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task? MedInfo Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2019	—	`conf`	Evaluating the Impact of Text Duplications on a Corpus of More than 600, 000 Clinical Narratives in a French Hospital. MedInfo William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, Bastien Rance
2019	J	`jnl`	Phenotypic similarity for rare disease: Ciliopathy diagnoses and subtyping. J. Biomed. Informatics Xiaoyi Chen, Nicolas Garcelon, Antoine Neuraz, Katy Billot, Marc Lelarge, Thomas Bonald, Hugo Garcia, Yoann Martin, Vincent Benoit, Marc Vincent, Hassan Faour, Maxime Douillet, Stanislas Lyonnet, Sophie Saunier, Anita Burgun
2019	J	`jnl`	What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse. Comput. Methods Programs Biomed. Vincent Looten, Liliane Kong Win Chang, Antoine Neuraz, Marie-Anne Landau-Loriot, Benoit Vedie, Jean-Louis Paul, Laëtitia Mauge, Nadia Rivet, Angela Bonifati, Gilles Chatellier, Anita Burgun, Bastien Rance
2018	J	`jnl`	A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. J. Biomed. Informatics Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, Arthur Delapalme, Arnold Munnich, Anita Burgun, Bastien Rance
2018	J	`jnl`	Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome framework. CoRR Simon Bussy, Raphaël Veil, Vincent Looten, Anita Burgun, Stéphane Gaïffas, Agathe Guilloux, Brigitte Ranque, Anne-Sophie Jannot
2018	J	`jnl`	Integrating Multimodal Radiation Therapy Data into i2b2. Appl. Clin. Inform. Eric Zapletal, Jean-Emmanuel Bibault, Philippe Giraud, Anita Burgun
2018	J	`jnl`	Natural language understanding for task oriented dialog in the biomedical domain in a low resources context. CoRR Antoine Neuraz, Leonardo Campillos-Llanos, Anita Burgun, Sophie Rosset
2018	—	`conf`	The Need of an Open Data Quality Policy: The Case of the "Transparency - Health" Database in the Prevention of Conflict of Interest. MIE Rodolphe Jantzen, Bastien Rance, Sandrine Katsahian, Anita Burgun, Vincent Looten
2017	J	`jnl`	A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease. BMC Medical Informatics Decis. Mak. Jean-Baptiste Escudié, Bastien Rance, Georgia Malamut, Sherine Khater, Anita Burgun, Christophe Cellier, Anne-Sophie Jannot
2017	J	`jnl`	An ontological analysis of medical Bayesian indicators of performance. J. Biomed. Semant. Adrien Barton, Jean-François Ethier, Régis Duvauferrier, Anita Burgun
2017	J	`jnl`	Exploring and visualizing multidimensional data in translational research platforms. Briefings Bioinform. William Dunn Jr, Anita Burgun, Marie-Odile Krebs, Bastien Rance
2017	J	`jnl`	Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack. J. Biomed. Informatics Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Sven Kracker, Felipe Suarez, Nadia Bahi-Buisson, Smail Hadj-Rabia, Alain Fischer, Arnold Munnich, Anita Burgun
2017	J	`jnl`	Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse. J. Am. Medical Informatics Assoc. Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Anita Burgun
2017	—	`conf`	Mining Adverse Drug Reactions in Social Media with Named Entity Recognition and Semantic Methods. MedInfo Xiaoyi Chen, Myrtille Deldossi, Rim Aboukhamis, Carole Faviez, Badisse Dahamna, Pierre Karapetiantz, Armelle Guenegou-Arnoux, Yannick Girardeau, Sylvie Guillemin-Lanne, Agnès Lillo-Le Louët, Nathalie Texier, Anita Burgun, Sandrine Katsahian
2017	—	`conf`	Past Indeterminacy in Data Warehouse Design. DEXA (2) Christina Khnaisser, Luc Lavoie, Anita Burgun, Jean-François Ethier
2017	J	`jnl`	The Georges Pompidou University Hospital Clinical Data Warehouse: A 8-years follow-up experience. Int. J. Medical Informatics Anne-Sophie Jannot, Eric Zapletal, Paul Avillach, Marie-France Mamzer, Anita Burgun, Patrice Degoulet
2017	J	`jnl`	eSource for clinical trials: Implementation and evaluation of a standards-based approach in a real world trial. CoRR Jean-François Ethier, Vasa Curcin, Mark M. McGilchrist, Sarah N. Lim Choi Keung, Lei Zhao, Anna Andreasson, Piotr Bródka, Radoslaw Michalski, Theodoros N. Arvanitis, Nikolaos Mastellos, Anita Burgun, Brendan C. Delaney
2017	J	`jnl`	eSource for clinical trials: Implementation and evaluation of a standards-based approach in a real world trial. Int. J. Medical Informatics Jean-François Ethier, Vasa Curcin, Mark M. McGilchrist, Sarah N. Lim Choi Keung, Lei Zhao, Anna Andreasson, Piotr Bródka, Radoslaw Michalski, Theodoros N. Arvanitis, Nikolaos Mastellos, Anita Burgun, Brendan C. Delaney
2016	J	`jnl`	Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure. Appl. Clin. Inform. Vincent Canuel, Hector Countouris, Pierre Laurent-Puig, Anita Burgun, Bastien Rance
2016	J	`jnl`	Using Literature-Based Discovery to Explain Adverse Drug Effects. J. Medical Syst. Dimitar Hristovski, Andrej Kastrin, Dejan Dinevski, Anita Burgun, Lovro Ziberna, Thomas C. Rindflesch
2015	J	`jnl`	An Ontology-Based Annotation of Cardiac Implantable Electronic Devices to Detect Therapy Changes in a National Registry. IEEE J. Biomed. Health Informatics Arnaud Rosier, Philippe Mabo, Michel Chauvin, Anita Burgun
2015	—	`conf`	Evaluation of Internet Social Networks using Net scoring Tool: A Case Study in Adverse Drug Reaction Mining. MIE Sandrine Katsahian, Erica Simond Moreau, Damien Leprovost, Jérémy Lardon, Cédric Bousquet, Gaétan Kerdelhué, Redhouane Abdellaoui, Nathalie Texier, Anita Burgun, Abdelali Boussadi, Carole Faviez
2015	—	`conf`	Formalization of indicators of diagnostic performance in a realist ontology. ICBO Adrien Barton, Régis Duvauferrier, Anita Burgun
2015	—	`conf`	Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA). MedInfo Anita Burgun, Dina V. Oksen, Wolfgang Kuchinke, Hans-Ulrich Prokosch, Thomas Ganslandt, Iain E. Buchan, Tjeerd Pieter van Staa, James A. Cunningham, Marianne L. Gjerstorff, Jean-Charles Dufour, Jean-François Gibrat, Macha Nikolski, Pierre Verger, Anne Cambon-Thomsen, Cristina Masella, Emanuele Lettieri, Paolo Bertele, Marjut Salokannel, Rodolphe Thiébaut, Charles Persoz, Geneviève Chêne, Christian Ohmann
2015	Misc	`conf`	Reviewing 741 patients records in two hours with FASTVISU. AMIA Jean-Baptiste Escudié, Anne-Sophie Jannot, Eric Zapletal, Sarah Cohen Boulakia, Georgia Malamut, Anita Burgun, Bastien Rance
2015	—	`conf`	Transform: Implementing a Learning Healthcare System in Europe through Embedding Clinical Research into Clinical Practice. HICSS Sarah N. Lim Choi Keung, Lei Zhao, Vasa Curcin, Jean-François Ethier, Anita Burgun, Mark M. McGilchrist, Piotr Bródka, Wodzimierz Tuligowicz, Brendan C. Delaney, Theodoros N. Arvanitis, Anna Andreasson
2015	J	`jnl`	Translational research platforms integrating clinical and omics data: a review of publicly available solutions. Briefings Bioinform. Vincent Canuel, Bastien Rance, Paul Avillach, Patrice Degoulet, Anita Burgun
2014	—	`conf`	Enrichissement sémantique associé à la détection de la négation et des antécédents familiaux dans un entrepôt de données hospitalier. JFIM Nicolas Garcelon, Rémi Salomon, Anita Burgun
2014	J	`jnl`	Natural language processing of radiology reports for the detection of thromboembolic diseases and clinically relevant incidental findings. BMC Bioinform. Anne-Dominique Pham, Aurélie Névéol, Thomas Lavergne, Daisuke Yasunaga, Olivier Clément, Guy Meyer, Rémy Morello, Anita Burgun
2014	C	`conf`	The Cardiovascular Disease Ontology. FOIS Adrien Barton, Arnaud Rosier, Anita Burgun, Jean-François Ethier
2013	J	`jnl`	A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm. J. Am. Medical Informatics Assoc. Jean-François Ethier, Olivier Dameron, Vasa Curcin, Mark M. McGilchrist, Robert A. Verheij, Theodoros N. Arvanitis, Adel Taweel, Brendan Delaney, Anita Burgun
2013	J	`jnl`	OWL model of clinical trial eligibility criteria compatible with partially-known information. J. Biomed. Semant. Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourde, Anita Burgun, Marc Cuggia
2013	J	`jnl`	Phenome-Wide Association Studies on a Quantitative Trait: Application to TPMT Enzyme Activity and Thiopurine Therapy in Pharmacogenomics. PLoS Comput. Biol. Antoine Neuraz, Laurent Chouchana, Georgia Malamut, Christine Le Beller, Denis Roche, Philippe Beaune, Patrice Degoulet, Anita Burgun, Marie-Anne Loriot, Paul Avillach
2012	—	`conf`	Comparing Drools and ontology reasoning approaches for telecardiology decision support. MIE Pascal Van Hille, Julie Jacques, Julien Taillard, Arnaud Rosier, David Delerue, Anita Burgun, Olivier Dameron
2012	—	`conf`	Comparing drug-class membership in ATC and NDF-RT. IHI Fleur Mougin, Anita Burgun, Olivier Bodenreider
2012	J	`jnl`	GO2PUB: Querying PubMed with semantic expansion of gene ontology terms. J. Biomed. Semant. Charles Bettembourg, Christian Diot, Anita Burgun, Olivier Dameron
2012	—	`conf`	MRI image artifact ontology: A Proposed Method for Improved Recognition. MIE Jérémy Lasbleiz, John Morelli, Nicolas Schnel, Anita Burgun, Régis Duvauferrier, Hervé Saint-Jalmes
2012	—	`conf`	OWL Model of Clinical Trial Eligibility Criteria Compatible with Partially-known Information. SWAT4LS Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourde, Anita Burgun, Marc Cuggia
2012	C	`conf`	Probability assignments to dispositions in ontologies. FOIS Adrien Barton, Anita Burgun, Régis Duvauferrier
2012	Misc	`conf`	Using Literature-based Discovery to Explain Drug Adverse Effects. AMIA Dimitar Hristovski, Anita Burgun, Paul Avillach, Thomas C. Rindflesch
2011	—	`conf`	Creating a Magnetic Resonance Imaging Ontology. MIE Jérémy Lasbleiz, Hervé Saint-Jalmes, Régis Duvauferrier, Anita Burgun
2010	—	`conf`	A Framework for Comparing Phenotype Annotations of Orthologous Genes. MedInfo Olivier Bodenreider, Anita Burgun
2010	—	`conf`	Documentation in Pharmacovigilance: Using an ontology to extend and normalize Pubmed queries. MedInfo Denis Delamarre, Agnès Lillo-Le Louët, Laetitia Guillot, Anne Jamet, Eric Sadou, Theo Ouazine, Anita Burgun, Marie-Christine Jaulent
2010	—	`conf`	From French EHR to NCI ontology via UMLS. OM Paolo Besana, Marc Cuggia, Oussama Zekri, Annabel Bourde, Anita Burgun
2010	—	`conf`	Mapping BFO and DOLCE. MedInfo Lynda Temal, Arnaud Rosier, Olivier Dameron, Anita Burgun
2010	—	`conf`	Using Semantic Web Technologies for Clinical Trial Recruitment. ISWC (2) Paolo Besana, Marc Cuggia, Oussama Zekri, Annabel Bourde, Anita Burgun
2010	C	`conf`	Verification of parameters semantic compatibility for semi-automatic web service composition: a generic case study. iiWAS Nicolas Lebreton, Christophe Blanchet, Daniela Barreiro Claro, Julie Chabalier, Anita Burgun, Olivier Dameron
2009	—	`conf`	A Knowledge Management Platform for Documentation of Case Reports in Pharmacovigilance. MIE Florence Amardeilh, Cédric Bousquet, Sylvie Guillemin-Lanne, Mathilde Wiss-Thébault, Laetitia Guillot, Denis Delamarre, Agnès Lillo-Le Louët, Anita Burgun
2009	J	`jnl`	Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS. J. Biomed. Informatics Fleur Mougin, Olivier Bodenreider, Anita Burgun
2009	—	`conf`	Identifying anatomical concepts associated with ICD10 diseases. TIA Fleur Mougin, Olivier Bodenreider, Anita Burgun
2009	Misc	`conf`	Two approaches to integrating phenotype and clinical information. AMIA Anita Burgun, Fleur Mougin, Olivier Bodenreider
2008	J	`jnl`	A unified representation of findings in clinical radiology using the UMLS and DICOM. Int. J. Medical Informatics Valérie Bertaud, Jérémy Lasbleiz, Fleur Mougin, Anita Burgun, Régis Duvauferrier
2008	—	`conf`	Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System. DILS Fleur Mougin, Anita Burgun, Olivier Bodenreider, Julie Chabalier, Olivier Loréal, Pierre Le Beux
2008	—	`conf`	Integrating clinical, gene expression, protein expression and preanalytical data for in silico cancer research. MIE Delphine Rossille, Anita Burgun, Céline Pangault-Lorho, Thierry Fest
2008	Misc	`conf`	Using regular expressions to extract information on pacemaker implantation procedures from clinical reports. AMIA Arnaud Rosier, Anita Burgun, Philippe Mabo
2007	J	`jnl`	A method exploiting syntactic patterns and the UMLS semantics for aligning biomedical ontologies: The case of OBO disease ontologies. Int. J. Medical Informatics Gwenaëlle Marquet, Jean Mosser, Anita Burgun
2007	J	`jnl`	A transversal approach to predict gene product networks from ontology-based similarity. BMC Bioinform. Julie Chabalier, Jean Mosser, Anita Burgun
2007	Misc	`conf`	Grading glioma tumors using OWL-DL and NCI Thesaurus. AMIA Gwenaëlle Marquet, Olivier Dameron, Stephan Saikali, Jean Mosser, Anita Burgun
2007	—	`conf`	Integrating Biological Pathways in Disease Ontologies. MedInfo Julie Chabalier, Jean Mosser, Anita Burgun
2007	J	`jnl`	Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. Artif. Intell. Medicine Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun
2007	—	`conf`	Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes. Actes d'IC Fleur Mougin, Julie Chabalier, Olivier Bodenreider, Anita Burgun
2006	—	`conf`	Aligning biomedical ontologies using lexical methods and the UMLS: the case of Disease ontologies. MIE Gwenaëlle Marquet, Jean Mosser, Anita Burgun
2006	J	`jnl`	Amplification of Terminologia anatomica by French language terms using Latin terms matching algorithm: A prototype for other language. Int. J. Medical Informatics Paul Fabry, Robert H. Baud, Anita Burgun, Christian Lovis
2006	J	`jnl`	Combining biomedical knowledge and transcriptomic data to extract new knowledge on genes. J. Integr. Bioinform. Emilie Guérin, Gwenaëlle Marquet, Julie Chabalier, Marie-Bérengère Troadec, Christiane Guguen-Guillouzo, Olivier Loréal, Anita Burgun, Fouzia Moussouni
2006	J	`jnl`	Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets. BMC Bioinform. Marc Aubry, Annabelle Monnier, Celine Chicault, Marie de Tayrac, Marie-Dominique Galibert, Anita Burgun, Jean Mosser
2006	—	`conf`	Data Integration through data elements: Mapping data elements to terminological resources. SMBM Fleur Mougin, Anita Burgun, Olivier Bodenreider
2006	J	`jnl`	Desiderata for domain reference ontologies in biomedicine. J. Biomed. Informatics Anita Burgun
2006	—	`conf`	Evidence in pharmacovigilance: extracting Adverse Drug Reactions articles from MEDLINE to link them to case databases. MIE Nicolas Garcelon, Fleur Mougin, Cédric Bousquet, Anita Burgun
2006	J	`jnl`	Mapping data elements to terminological resources for integrating biomedical data sources. BMC Bioinform. Fleur Mougin, Anita Burgun, Olivier Bodenreider
2006	J	`jnl`	Problem-based learning in medical informatics for undergraduate medical students: An experiment in two medical schools. Int. J. Medical Informatics Anita Burgun, Stéfan Jacques Darmoni, Franck Le Duff, Jacques Wéber
2006	Misc	`conf`	Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration. AMIA Fleur Mougin, Anita Burgun, Olivier Bodenreider
2005	Misc	`conf`	Classifying diseases with respect to anatomy: a study in SNOMED CT. AMIA Anita Burgun, Olivier Bodenreider, Fleur Mougin
2005	—	`conf`	Integrating and Warehousing Liver Gene Expression Data and Related Biomedical Resources in GEDAW. DILS Emilie Guérin, Gwenaëlle Marquet, Anita Burgun, Olivier Loréal, Laure Berti-Équille, Ulf Leser, Fouzia Moussouni
2005	—	`conf`	Issues in the Classification of Disease Instances with Ontologies. MIE Anita Burgun, Olivier Bodenreider, Christian Jacquelinet
2005	J	`jnl`	Modelling a decision-support system for oncology using rule-based and case-based reasoning methodologies. Int. J. Medical Informatics Delphine Rossille, Jean-François Laurent, Anita Burgun
2005	Misc	`conf`	Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology. Pacific Symposium on Biocomputing Olivier Bodenreider, Marc Aubry, Anita Burgun
2005	—	`conf`	Toward a Unified Representation of Findings in Clinical Radiology. MIE Valérie Bertaud, Jérémy Lasbleiz, Fleur Mougin, Franck Marin, Anita Burgun, Régis Duvauferrier
2005	J	`jnl`	UMLF: a unified medical lexicon for French. Int. J. Medical Informatics Pierre Zweigenbaum, Robert H. Baud, Anita Burgun, Fiammetta Namer, Éric Jarrousse, Natalia Grabar, Patrick Ruch, Franck Le Duff, Jean-François Forget, Magaly Douyère, Stéfan Jacques Darmoni
2004	—	`conf`	Aligning Knowledge Sources in the UMLS: Methods, Quantitative Results, and Applications. MedInfo Olivier Bodenreider, Anita Burgun
2004	—	`conf`	Experiments in cross-language medical information retrieval using a mixing translation module. MedInfo Tuan Due Tran, Nicolas Garcelon, Anita Burgun, Pierre Le Beux
2004	—	`conf`	Investigating subsumption in DL-based terminologies: A Case Study in SNOMED CT . KR-MED Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun
2004	—	`conf`	Towards the automatic generation of biomedical sources schema. MedInfo Fleur Mougin, Anita Burgun, Olivier Loréal, Pierre Le Beux
2003	—	`conf`	A contextual coding system for transplantation and end stage diseases. MIE Christian Jacquelinet, Anita Burgun, Sami Djabbour, Denis Delamarre, Patrick Clerc, Bernard Boutin, Pierre Le Beux
2003	J	`jnl`	Automatic concept extraction from spoken medical reports. Int. J. Medical Informatics André Happe, Bruno Pouliquen, Anita Burgun, Marc Cuggia, Pierre Le Beux
2003	—	`conf`	BioMeKe : an ontology-based biomedical knowledge extraction system devoted to transcriptome analysis. MIE Gwenaëlle Marquet, Anita Burgun, Fouzia Moussouni, Emilie Guérin, Franck Le Duff, Olivier Loréal
2003	J	`jnl`	Collaborative environment for clinical reasoning and distance learning sessions. Int. J. Medical Informatics Elizabeth Medélez Ortega, Anita Burgun, Franck Le Duff, Pierre Le Beux
2003	J	`jnl`	Developing the ontological foundations of a terminological system for end-stage diseases, organ failure, dialysis and transplantation. Int. J. Medical Informatics Christian Jacquelinet, Anita Burgun, Denis Delamarre, Nigel Strang, Sami Djabbour, Bernard Boutin, Pierre Le Beux
2003	—	`conf`	Evaluation of WordNet as a source of lay knowledge for molecular biology and genetic diseases: A feasibility study. MIE Olivier Bodenreider, Anita Burgun, Joyce A. Mitchell
2003	B	`conf`	How to Represent Medical Ontologies in View of a Semantic Web? AIME Christine Golbreich, Olivier Dameron, Bernard Gibaud, Anita Burgun
2003	—	`conf`	Modelling dependencies between relations to ensure consistency of a cerebral cortex anatomy knowledge base. MIE Olivier Dameron, Anita Burgun, Xavier Morandi, Bernard Gibaud
2003	—	`conf`	Modelling of a case-based retrieval system for oncology. MIE Delphine Rossille, Jean-François Laurent, Anita Burgun
2003	—	`conf`	Towards a Unified Medical Lexicon for French. MIE Pierre Zweigenbaum, Robert H. Baud, Anita Burgun, Fiammetta Namer, Éric Jarrousse, Natalia Grabar, Patrick Ruch, Franck Le Duff, Benoît Thirion, Stéfan Jacques Darmoni
2003	Misc	`conf`	UMLF: a Unified Medical Lexicon for French. AMIA Pierre Zweigenbaum, Robert H. Baud, Anita Burgun, Fiammetta Namer, Éric Jarrousse, Natalia Grabar, Patrick Ruch, Franck Le Duff, Benoît Thirion, Stéfan Jacques Darmoni
2003	Misc	`conf`	Web Ontology Language Requirements w.r.t Expressiveness of Taxonomy and Axioms in Medicine. ISWC Christine Golbreich, Olivier Dameron, Bernard Gibaud, Anita Burgun
2002	J	`jnl`	Assessing the consistency of a biomedical terminology through lexical knowledge. Int. J. Medical Informatics Olivier Bodenreider, Anita Burgun, Thomas C. Rindflesch
2002	Misc	`conf`	Representation of roles in biomedical ontologies: a case study in functional genomics. AMIA Anita Burgun, Olivier Bodenreider, Franck Le Duff, Fouzia Moussouni, Olivier Loréal
2002	Misc	`conf`	Towards a sharable numeric and symbolic knowledge base on cerebral cortex anatomy: lessons learned from a prototype. AMIA Olivier Dameron, Bernard Gibaud, Anita Burgun, Xavier Morandi
2002	—	`conf`	Unsupervised, corpus-based method for extending a biomedical terminology. ACL Workshop on Natural Language Processing in the Biomedical Domain Olivier Bodenreider, Thomas C. Rindflesch, Anita Burgun
2001	—	`conf`	Aggregating UMLS Semantic Types for Reducing Conceptual Complexity. MedInfo Alexa T. McCray, Anita Burgun, Olivier Bodenreider
2001	C	`conf`	Aspects of the taxonomic relation in the biomedical domain. FOIS Anita Burgun, Olivier Bodenreider
2001	—	`conf`	Building an Ontology for End-stage Diseases and Organ Failure in the Context of Transplantation and Dialysis. MedInfo Christian Jacquelinet, Anita Burgun, Denis Delamarre, Nigel Strang, Bernard Boutin, Pierre Le Beux
2001	—	`conf`	Design of a CSCL Environment for Clinical Reasoning Learning and Problem-Based Learning in Medicine. MedInfo Elizabeth Medélez Ortega, Anita Burgun, Franck Le Duff, Pierre Le Beux
2001	Misc	`conf`	Mapping the UMLS Semantic Network into general ontologies. AMIA Anita Burgun, Olivier Bodenreider
2001	—	`conf`	Methods for Exploring the Semantics of the Relationships between Co-occurring UMLS Concepts. MedInfo Anita Burgun, Olivier Bodenreider
2001	—	`conf`	Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge. MedInfo Robert H. Baud, Stephen B. Johnson, Christopher G. Chute, Olivier Bodenreider, Jeremy Rogers, Anita Burgun
2001	—	`conf`	Sharing Medical Data for Patient Path Analysis with Data Mining Method. MedInfo Franck Le Duff, André Happe, Anita Burgun, Sophie Levionnois, Marc Brémond, Pierre Le Beux
2000	Misc	`conf`	A Probabilistic Diagnostic Aid System on Internet, Using Data From a Large Medical Knowledge Base. AMIA Mireille Cleret, Franck Le Duff, Anita Burgun, Pierre Le Beux
2000	Misc	`conf`	Knowledge acquisition to qualify Unified Medical Language System interconceptual relationships. AMIA Franck Le Duff, Anita Burgun, Mireille Cleret, Bruno Pouliquen, Victoire Barac'h, Pierre Le Beux
1999	—	`conf`	A method for an automated decomposition of a complex term into its conceptual components. MIE Victoire Barac'h, Anita Burgun, Denis Delamarre, Pierre Le Beux
1999	—	`conf`	Automatic enrichment of the Unified Medical Language System starting from the ADM knowledge base. MIE Franck Le Duff, Anita Burgun, Bruno Pouliquen, Denis Delamarre, Pierre Le Beux
1998	—	`conf`	A Collaborative Approach to Building a Terminology for Medical Procedures using a Web-based Application : From Specifications to daily use. MedInfo Anita Burgun, Olivier Bodenreider, Patrick Denier, Denis Delamarre, Geneviève Botti, Philippe Oberlin, Jean-Michel Léevêque, Marc Brémond, Marius Fieschi, Pierre Le Beux
1998	J	`jnl`	Case Report: Evaluation of the Unified Medical Language System as a Medical Knowledge Source. J. Am. Medical Informatics Assoc. Olivier Bodenreider, Anita Burgun, Geneviève Botti, Marius Fieschi, Pierre Le Beux, François Kohler
1997	J	`jnl`	Application of Information Technology: A Web Terminology Server Using UMLS for the Description of Medical Procedures. J. Am. Medical Informatics Assoc. Anita Burgun, Patrick Denier, Olivier Bodenreider, Geneviève Botti, Denis Delamarre, Bruno Pouliquen, Philippe Oberlin, Jean M. Lévéque, Bertrand Lukacs, François Kohler, Marius Fieschi, Pierre Le Beux
1991	—	`conf`	A Multiaxial Model for the Description of Medico-Surgical Procedures. MIE Anita Burgun, Pierre Le Beux, P. Lenoir