Anika Oellrich

30 papers B 2Misc 1Journal 19Unranked 8

Year	Rank	Type	Title / Venue / Authors
2017	J	`jnl`	Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease. Database J. Biol. Databases Curation Honghan Wu, Anika Oellrich, Christine Girges, Bernard de Bono, Tim J. P. Hubbard, Richard J. B. Dobson
2017	—	`conf`	The psycho-env corpus: research articles annotated for knowledge discovery on correlating mental diseases and environmental factors. KDH@IJCAI Hui Wang, Quan Sun, Anika Oellrich, Honghan Wu, Richard J. B. Dobson
2016	—	`conf`	Challenges and opportunities for system biology standards and tools in medical research. ODLS Matthias König, Anika Oellrich, Dagmar Waltemath, Richard J. B. Dobson, Tim J. P. Hubbard, Olaf Wolkenhauer
2016	—	`conf`	Don't Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records. CLPsych@HLT-NAACL George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean, Maria Liakata, Rina Dutta
2016	B	`conf`	Multi-label Annotation in Scientific Articles - The Multi-label Cancer Risk Assessment Corpus. LREC James Ravenscroft, Anika Oellrich, Shyamasree Saha, Maria Liakata
2016	J	`jnl`	Reporting phenotypes in mouse models when considering body size as a potential confounder. J. Biomed. Semant. Anika Oellrich, Terrence F. Meehan, Helen E. Parkinson, Sirarat Sarntivijai, Jacqueline K. White, Natasha A. Karp
2016	J	`jnl`	The digital revolution in phenotyping. Briefings Bioinform. Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier
2016	—	`conf`	The language of mental health problems in social media. CLPsych@HLT-NAACL George Gkotsis, Anika Oellrich, Tim J. P. Hubbard, Richard J. B. Dobson, Maria Liakata, Sumithra Velupillai, Rina Dutta
2016	J	`jnl`	Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. J. Biomed. Semant. Karin Verspoor, Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra, Larisa N. Soldatova, Michel Dumontier, Nigam Shah
2015	J	`jnl`	Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora. Database J. Biol. Databases Curation Tudor Groza, Sebastian Köhler, Sandra C. Doelken, Nigel Collier, Anika Oellrich, Damian Smedley, Francisco M. Couto, Gareth Baynam, Andreas Zankl, Peter N. Robinson
2015	J	`jnl`	Concept selection for phenotypes and diseases using learn to rank. J. Biomed. Semant. Nigel Collier, Anika Oellrich, Tudor Groza
2015	J	`jnl`	Linking gene expression to phenotypes via pathway information. J. Biomed. Semant. Irene Papatheodorou, Anika Oellrich, Damian Smedley
2015	J	`jnl`	PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. Database J. Biol. Databases Curation Nigel Collier, Tudor Groza, Damian Smedley, Peter N. Robinson, Anika Oellrich, Dietrich Rebholz-Schuhmann
2015	J	`jnl`	Special issue on bio-ontologies and phenotypes. J. Biomed. Semant. Larisa N. Soldatova, Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah
2014	J	`jnl`	Linking tissues to phenotypes using gene expression profiles. Database J. Biol. Databases Curation Anika Oellrich, Damian Smedley
2014	J	`jnl`	The influence of disease categories on gene candidate predictions from model organism phenotypes. J. Biomed. Semant. Anika Oellrich, Sebastian Köhler, Nicole L. Washington, Chris Mungall, Suzanna Lewis, Melissa A. Haendel, Peter N. Robinson, Damian Smedley
2014	J	`jnl`	Using association rule mining to determine promising secondary phenotyping hypotheses. Bioinform. Anika Oellrich, Julius O. B. Jacobsen, Irene Papatheodorou, Damian Smedley
2013	J	`jnl`	Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP. J. Biomed. Semant. Anika Oellrich, Christoph Grabmüller, Dietrich Rebholz-Schuhmann
2013	J	`jnl`	PhenoDigm: analyzing curated annotations to associate animal models with human diseases. Database J. Biol. Databases Curation Damian Smedley, Anika Oellrich, Sebastian Köhler, Barbara J. Ruef, Monte Westerfield, Peter N. Robinson, Suzanna Lewis, Christopher J. Mungall
2013	—	`conf`	Using silver and semi-gold standard corpora to compare open named entity recognisers. BIBM Tudor Groza, Anika Oellrich, Nigel Collier
2012	B	`conf`	A Hybrid Approach to Finding Phenotype Candidates in Genetic Texts. COLING Nigel Collier, Mai-Vu Tran, Hoang-Quynh Le, Anika Oellrich, Ai Kawazoe, Martin Hall-May, Dietrich Rebholz-Schuhmann
2012	Misc	`conf`	Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
2012	J	`jnl`	Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. J. Biomed. Semant. Anika Oellrich, Georgios V. Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann
2011	J	`jnl`	A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
2011	—	`conf`	Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications. SePublica Amanda Clare, Samuel Croset, Christoph Grabmüller, Senay Kafkas, Maria Liakata, Anika Oellrich, Dietrich Rebholz-Schuhmann
2011	J	`jnl`	Ontology design patterns to disambiguate relations between genes and gene products in GENIA. J. Biomed. Semant. Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann
2010	—	`conf`	Applying ontology design patterns to the implementation of relations in GENIA. Semantic Mining in Biomedicine Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann
2010	J	`jnl`	Interoperability between phenotype and anatomy ontologies. Bioinform. Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann
2010	—	`conf`	Relational Patterns in OWL and Their Application to OBO. OWLED Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann
2010	J	`jnl`	Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinform. Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre