Andy D. Perkins

25 papers B 1C 2Misc 2Journal 15Unranked 5
YearRankTypeTitle / Venue / Authors
2022 — conf
NBT (no-boundary thinking): needed to attend to ethical implications of data and AI.
BCB
Joan Peckham, Andy D. Perkins, Tayo Obafemi-Ajayi, Xiuzhen Huang
2022 J jnl
No-boundary thinking: a viable solution to ethical data-driven AI in precision medicine.
AI Ethics
Tayo Obafemi-Ajayi, Andy D. Perkins, Bindu Nanduri, Donald C. Wunsch II, James A. Foster, Joan Peckham
2022 — conf
Team building without boundaries.
BCB
Andy D. Perkins, Joan Peckham, Tayo Obafemi-Ajayi, Xiuzhen Huang
2021 J jnl
Microsatellites as Agents of Adaptive Change: An RNA-Seq-Based Comparative Study of Transcriptomes from Five Helianthus Species.
Symmetry
Chathurani Ranathunge, Sreepriya Pramod, Sébastien Renaut, Gregory L. Wheeler, Andy D. Perkins, Loren H. Rieseberg, Mark E. Welch
2020 J jnl
Toward a more holistic method of genome assembly assessment.
BMC Bioinform.
Adam Thrash, Federico Hoffmann, Andy D. Perkins
2017 Misc conf
No-Boundary Thinking in Bioinformatics.
PSB
Jason H. Moore, Steven F. Jennings, Casey S. Greene, Lawrence E. Hunter, Andy D. Perkins, ClarLynda R. Williams-DeVane, Donald C. Wunsch, Zhongming Zhao, Xiuzhen Huang
2015 J jnl
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm.
BioData Min.
Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore
2015 J jnl
Clustering high throughput biological data with B-MST, a minimum spanning tree based heuristic.
Comput. Biol. Medicine
Harun Pirim, Burak Eksioglu, Andy D. Perkins
2015 — conf
Investigating genome similarity through cross mapping percentage.
BCB
Jonathan Rice, Kortni Dees, Adam Thrash, Andy D. Perkins
2014 J jnl
Proceedings of the 2014 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform.
Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Andy D. Perkins, Chaoyang Zhang, Peter Hoyt, Rakesh Kaundal
2013 J jnl
No-boundary thinking in bioinformatics research.
BioData Min.
Xiuzhen Huang, Barry Bruce, Alison Buchan, Clare Bates Congdon, Carole L. Cramer, Steven F. Jennings, Hongmei Jiang, Zenglu Li, Gail McClure, Rick McMullen, Jason H. Moore, Bindu Nanduri, Joan Peckham, Andy D. Perkins, Shawn W. Polson, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Zhongming Zhao
2013 J jnl
Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform.
Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Rakesh Kaundal, Andy D. Perkins, Edward J. Perkins, Doris M. Kupfer, Gordon K. Springer
2013 — conf
Statistical Methods for Ambiguous Sequence Mappings.
BCB
Tamer Aldwairi, Bindu Nanduri, Mahalingam Ramkumar, Dilip Gautam, Michael Johnson, Andy D. Perkins
2012 J jnl
A systematic comparison of genome-scale clustering algorithms.
BMC Bioinform.
Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston
2012 J jnl
Clustering of high throughput gene expression data.
Comput. Oper. Res.
Harun Pirim, Burak Eksioglu, Andy D. Perkins, Çetin Yüceer
2011 — conf
A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract).
ISBRA
Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston
2010 B conf
Performance evaluation of a community structure finding algorithm using modularity and C-rand measures.
IJCNN
Harun Pirim, Dilip Gautam, Tanmay Bhowmik, Andy D. Perkins, Burak Eksioglu
2009 J jnl
A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation.
BMC Syst. Biol.
Reza Mobini, Bengt A. Andersson, Jonas Erjefält, Mirjana Hahn-Zoric, Michael A. Langston, Andy D. Perkins, Lars Cardell, Mikael Benson
2009 J jnl
Integrating phenotype and gene expression data for predicting gene function.
BMC Bioinform.
Brandon M. Malone, Andy D. Perkins, Susan M. Bridges
2009 J jnl
Threshold selection in gene co-expression networks using spectral graph theory techniques.
BMC Bioinform.
Andy D. Perkins, Michael A. Langston
2009 C conf
Using out-of-core techniques to produce exact solutions to the maximum clique problem on extremely large graphs.
AICCSA
Gary L. Rogers, Andy D. Perkins, Charles A. Phillips, John D. Eblen, Faisal N. Abu-Khzam, Michael A. Langston
2008 J jnl
Innovative Computational Methods for Transcriptomic Data Analysis: A Case Study in the Use of FPT for Practical Algorithm Design and Implementation.
Comput. J.
Michael A. Langston, Andy D. Perkins, Arnold M. Saxton, Jon A. Scharff, Brynn H. Voy
2006 C conf
Computational Analysis of Mass Spectrometry Data Using Novel Combinatorial Methods.
AICCSA
Ahmed Fadiel, Michael A. Langston, Xinxia Peng, Andy D. Perkins, Hugh S. Taylor, Ozge Tuncalp, D. Vitello, Paul H. Pevsner, Frederick Naftolin
2006 J jnl
Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms.
PLoS Comput. Biol.
Brynn H. Voy, Jon A. Scharff, Andy D. Perkins, Arnold M. Saxton, Bhavesh Borate, Elissa J. Chesler, Lisa K. Branstetter, Michael A. Langston
2006 Misc conf
Innovative computational methods for transcriptomic data analysis.
SAC
Michael A. Langston, Andy D. Perkins, Arnold M. Saxton, Jon A. Scharff, Brynn H. Voy