André Fujita - RankMe

49 papers Journal 45Unranked 4

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A message-passing approach to obtain the trace of matrix functions with applications to network analysis. Numer. Algorithms Grover Enrique Castro Guzman, Peter Florian Stadler, André Fujita
2026	J	`jnl`	StatGraph: an R package for complex network statistical analyses based on spectrum. SoftwareX Grover E. C. Guzman, Diogo Ricardo da Costa, Eduardo Silva Lira, Suzana de Siqueira Santos, Taiane Coelho Ramos, Daniel Yasumasa Takahashi, André Fujita
2025	J	`jnl`	Inferences on the Watts-Strogatz Model: A Study on Brain Functional Connectivity. Neuroinformatics Allan Falconi-Souto, Rodrigo M. Cabral-Carvalho, André Fujita, João Ricardo Sato
2025	J	`jnl`	Primitive, edge-short, isometric, and pantochordal cycles. Art Discret. Appl. Math. Gover E. C. Guzman, Marcos E. González Laffitte, André Fujita, Peter F. Stadler
2025	J	`jnl`	Statistical methods for hypergraphs: a parameter estimator, a model selection, and a comparative test. J. Complex Networks Grover E. C. Guzman, André Fujita
2025	J	`jnl`	Vertex-wise graph's spectral density decomposition and its applications. J. Complex Networks Grover E. C. Guzman, Daniel Yasumasa Takahashi, André Fujita
2023	J	`jnl`	A fast algorithm to approximate the spectral density of locally tree-like networks with assortativity. J. Complex Networks Grover E. C. Guzman, André Fujita
2023	J	`jnl`	A model-based clustering algorithm with covariates adjustment and its application to lung cancer stratification. J. Bioinform. Comput. Biol. Carlos E. M. Relvas, Asuka Nakata, Guoan Chen, David G. Beer, Noriko Gotoh, André Fujita
2023	—	`conf`	Spectrum-Based Statistical Methods for Directed Graphs with Applications in Biological Data. BSB Victor Chavauty Villela, Eduardo Silva Lira, André Fujita
2022	J	`jnl`	A fast parameter estimator for large complex networks. J. Complex Networks Grover E. C. Guzman, Daniel Yasumasa Takahashi, André Fujita
2022	J	`jnl`	Applications of graph theory to the analysis of fNIRS data in hyperscanning paradigms. Frontiers Comput. Neurosci. Amanda Yumi Ambriola Oku, Candida Barreto, Guilherme Bruneri, Guilherme Brockington, André Fujita, João Ricardo Sato
2022	J	`jnl`	Efficient eigenvalue counts for tree-like networks. J. Complex Networks Grover E. C. Guzman, Peter F. Stadler, André Fujita
2021	J	`jnl`	Convolution-based linear discriminant analysis for functional data classification. Inf. Sci. Grover E. C. Guzman, André Fujita
2021	J	`jnl`	Efficient Laplacian spectral density computations for networks with arbitrary degree distributions. Netw. Sci. Grover E. C. Guzman, Peter F. Stadler, André Fujita
2021	J	`jnl`	Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder. Entropy Adèle Helena Ribeiro, Maciel Calebe Vidal, João Ricardo Sato, André Fujita
2021	—	`conf`	Predicting soft robot's locomotion fitness. GECCO Companion Renata B. Biazzi, André Fujita, Daniel Y. Takahashi
2021	J	`jnl`	Spectral density of random graphs: convergence properties and application in model fitting. J. Complex Networks Suzana de Siqueira Santos, André Fujita, Catherine Matias
2020	J	`jnl`	A semi-parametric statistical test to compare complex networks. J. Complex Networks André Fujita, Eduardo Silva Lira, Suzana de Siqueira Santos, Silvia Yumi Bando, Gabriela Eleutério Soares, Daniel Yasumasa Takahashi
2020	J	`jnl`	Stage I non-small cell lung cancer stratification by using a model-based clustering algorithm with covariates. CoRR Carlos E. M. Relvas, André Fujita
2018	J	`jnl`	Complex Network Measures in Autism Spectrum Disorders. IEEE ACM Trans. Comput. Biol. Bioinform. João Ricardo Sato, Maciel Calebe Vidal, Suzana de Siqueira Santos, Katlin Brauer Massirer, André Fujita
2017	J	`jnl`	Correlation between graphs with an application to brain network analysis. Comput. Stat. Data Anal. André Fujita, Daniel Yasumasa Takahashi, Joana Bisol Balardin, Maciel Calebe Vidal, João Ricardo Sato
2016	—	`conf`	Source and sink nodes in absence seizures. EMBC Abner Cardoso Rodrigues, Birajara S. Machado, Luis Otavio S. F. Caboclo, André Fujita, Luiz A. Baccalá, Koichi Sameshima
2014	J	`jnl`	A comparative study of statistical methods used to identify dependencies between gene expression signals. Briefings Bioinform. Suzana de Siqueira Santos, Daniel Yasumasa Takahashi, Asuka Nakata, André Fujita
2014	J	`jnl`	A non-parametric method to estimate the number of clusters. Comput. Stat. Data Anal. André Fujita, Daniel Yasumasa Takahashi, Alexandre Galvão Patriota
2013	J	`jnl`	Measuring network's entropy in ADHD: A new approach to investigate neuropsychiatric disorders. NeuroImage João Ricardo Sato, Daniel Yasumasa Takahashi, Marcelo Queiroz Hoexter, Katlin Brauer Massirer, André Fujita
2013	J	`jnl`	XiP: a computational environment to create, extend and share workflows. Bioinform. Masao Nagasaki, André Fujita, Yayoi Sekiya, Ayumu Saito, Emi Ikeda, Chen Li, Satoru Miyano
2012	J	`jnl`	Discriminating different classes of biological networks by analyzing the graphs spectra distribution CoRR Daniel Yasumasa Takahashi, João Ricardo Sato, Carlos Eduardo Ferreira, André Fujita
2012	J	`jnl`	Functional clustering of time series gene expression data by Granger causality. BMC Syst. Biol. André Fujita, Patricia Severino, Kaname Kojima, João Ricardo Sato, Alexandre Galvão Patriota, Satoru Miyano
2012	J	`jnl`	Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genom. Kaname Kojima, Seiya Imoto, Rui Yamaguchi, André Fujita, Mai Yamauchi, Noriko Gotoh, Satoru Miyano
2011	J	`jnl`	Inferring Contagion in Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. André Fujita, João Ricardo Sato, Marcos Angelo Almeida Demasi, Rui Yamaguchi, Teppei Shimamura, Carlos Eduardo Ferreira, Mari Cleide Sogayar, Satoru Miyano
2011	J	`jnl`	Systems biology model repository for macrophage pathway simulation. Bioinform. Masao Nagasaki, Ayumu Saito, André Fujita, Georg Tremmel, Kazuko Ueno, Emi Ikeda, Euna Jeong, Satoru Miyano
2010	J	`jnl`	A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets. Bioinform. André Fujita, Kaname Kojima, Alexandre Galvão Patriota, João Ricardo Sato, Patricia Severino, Satoru Miyano
2010	J	`jnl`	Analyzing the connectivity between regions of interest: An approach based on cluster Granger causality for fMRI data analysis. NeuroImage João Ricardo Sato, André Fujita, Ellison Fernando Cardoso, Carlos E. Thomaz, Michael J. Brammer, Edson Amaro Jr.
2010	—	`conf`	Granger Causality in Systems Biology: Modeling Gene Networks in Time Series Microarray Data Using Vector Autoregressive Models. BSB André Fujita, Patricia Severino, João Ricardo Sato, Satoru Miyano
2010	J	`jnl`	Identification of Granger Causality between Gene Sets. J. Bioinform. Comput. Biol. André Fujita, João Ricardo Sato, Kaname Kojima, Luciana Rodrigues Gomes, Masao Nagasaki, Mari Cleide Sogayar, Satoru Miyano
2010	J	`jnl`	Model-free unsupervised gene set screening based on information enrichment in expression profiles. Bioinform. Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, André Fujita, Teppei Shimamura, Satoru Miyano
2009	J	`jnl`	Comparing Pearson, Spearman and Hoeffding's d Measure for Gene Expression Association Analysis. J. Bioinform. Comput. Biol. André Fujita, João Ricardo Sato, Marcos Angelo Almeida Demasi, Mari Cleide Sogayar, Carlos Eduardo Ferreira, Satoru Miyano
2009	J	`jnl`	Corrigendum to "Evaluating SVM and MLDA in the extraction of discriminant regions for mental state prediction": [NeuroImage 46 (2009) 105-114]. NeuroImage João Ricardo Sato, André Fujita, Carlos Eduardo Thomaz, Maria da Graça Morais Martin, Janaina Mourão Miranda, Michael John Brammer, Edson Amaro Jr.
2009	J	`jnl`	Evaluating SVM and MLDA in the extraction of discriminant regions for mental state prediction. NeuroImage João Ricardo Sato, André Fujita, Carlos Eduardo Thomaz, Maria da Graça Morais Martin, Janaina Mourão Miranda, Michael John Brammer, Edson Amaro Júnior
2009	J	`jnl`	Recursive regularization for inferring gene networks from time-course gene expression profiles. BMC Syst. Biol. Teppei Shimamura, Seiya Imoto, Rui Yamaguchi, André Fujita, Masao Nagasaki, Satoru Miyano
2009	J	`jnl`	The impact of measurement errors in the identification of regulatory networks. BMC Bioinform. André Fujita, Alexandre Galvão Patriota, João Ricardo Sato, Satoru Miyano
2008	J	`jnl`	Hyperplane navigation: A method to set individual scores in fMRI group datasets. NeuroImage João Ricardo Sato, Carlos Eduardo Thomaz, Ellison Fernando Cardoso, André Fujita, Maria da Graça Morais Martin, Edson Amaro Jr.
2008	J	`jnl`	Modeling Nonlinear Gene Regulatory Networks from Time Series Gene Expression Data. J. Bioinform. Comput. Biol. André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Mari Cleide Sogayar, Carlos Eduardo Ferreira, Satoru Miyano
2008	J	`jnl`	Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates. BMC Syst. Biol. André Fujita, Luciana Rodrigues Gomes, João Ricardo Sato, Rui Yamaguchi, Carlos E. Thomaz, Mari Cleide Sogayar, Satoru Miyano
2007	J	`jnl`	DWT-CEM: an algorithm for scale-temporal clustering in fMRI. Biol. Cybern. João Ricardo Sato, André Fujita, Edson Amaro Jr., Janaina Mourão Miranda, Pedro Alberto Morettin, Michael John Brammer
2007	J	`jnl`	GEDI: a user-friendly toolbox for analysis of large-scale gene expression data. BMC Bioinform. André Fujita, João Ricardo Sato, Carlos Eduardo Ferreira, Mari Cleide Sogayar
2007	J	`jnl`	Modeling gene expression regulatory networks with the sparse vector autoregressive model. BMC Syst. Biol. André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Rui Yamaguchi, Satoru Miyano, Mari Cleide Sogayar, Carlos Eduardo Ferreira
2007	J	`jnl`	Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method. Bioinform. André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Pedro Alberto Morettin, Mari Cleide Sogayar, Carlos Eduardo Ferreira
2006	J	`jnl`	Evaluating different methods of microarray data normalization. BMC Bioinform. André Fujita, João Ricardo Sato, Leonardo de Oliveira Rodrigues, Carlos Eduardo Ferreira, Mari Cleide Sogayar