André Altmann

40 papers A 1Journal 23Unranked 15

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A computationally frugal open-source foundation model for thoracic disease detection in lung cancer screening programs. CoRR Niccolò McConnell, Pardeep Vasudev, Daisuke Yamada, Daryl Cheng, Mehran Azimbagirad, John McCabe, Shahab Aslani, Ahmed H. Shahin, Yukun Zhou, SUMMIT Consortium, André Altmann, Yipeng Hu, Paul Taylor, Sam M. Janes, Daniel C. Alexander, Joseph Jacob
2025	J	`jnl`	A large-scale multi-centre study characterising atrophy heterogeneity in Alzheimer's disease. NeuroImage Vikram Venkatraghavan, Damiano Archetti, Pierrick Bourgeat, Chenyang Jiang, Mara ten Kate, Anna Catharina van Loenhoud, Rik Ossenkoppele, Charlotte E. Teunissen, Elsmarieke van de Giessen, Yolande A. L. Pijnenburg, Giovanni B. Frisoni, Béla Weiss, Zoltán Vidnyánszky, Tibor Auer, Stanley Durrleman, Alberto Redolfi, Simon M. Laws, Paul Maruff, Neil P. Oxtoby, André Altmann, Daniel C. Alexander, Wiesje M. van der Flier, Frederik Barkhof, Betty M. Tijms
2025	—	`conf`	Efficient Foundation Model Pre-training on Mixed Retina Images from Similar Modalities. EMA4MICCAI Boxuan Li, Yukun Zhou, André Altmann, Pearse A. Keane
2025	J	`jnl`	Enhancing Contrastive Learning for Retinal Imaging via Adjusted Augmentation Scales. CoRR Zijie Cheng, Boxuan Li, André Altmann, Pearse A. Keane, Yukun Zhou
2025	J	`jnl`	Understanding the robustness of vision-language models to medical image artefacts. npj Digit. Medicine Zijie Cheng, Ariel Yuhan Ong, Siegfried K. Wagner, David Adrian Merle, Lie Ju, Hanyuan Zhang, Ruinian Chen, Linze Pang, Boxuan Li, Tiantian He, Emma Anran Ran, Hongyang Jiang, Gabriel Dawei Yang, Ke Zou, Jocelyn Hui Lin Goh, Sahana Srinivasan, André Altmann, Daniel C. Alexander, Carol Y. Cheung, Yih Chung Tham, Pearse A. Keane, Yukun Zhou
2024	J	`jnl`	A tutorial on multi-view autoencoders using the multi-view-AE library. CoRR Ana Lawry Aguila, André Altmann
2024	J	`jnl`	Disentangled Diffusion Autoencoder for Harmonization of Multi-site Neuroimaging Data. CoRR Ayodeji Ijishakin, Ana Lawry Aguila, Elizabeth Levitis, Ahmed Abdulaal, André Altmann, James Cole
2023	—	`conf`	Multi-modal Variational Autoencoders for Normative Modelling Across Multiple Imaging Modalities. MICCAI (1) Ana Lawry Aguila, James Chapman, André Altmann
2023	J	`jnl`	Multi-modal Variational Autoencoders for normative modelling across multiple imaging modalities. CoRR Ana Lawry Aguila, James Chapman, André Altmann
2023	J	`jnl`	Multi-view-AE: A Python package for multi-view autoencoder models. J. Open Source Softw. Ana Lawry Aguila, Alejandra Jayme, Nina Montaña Brown, Vincent Heuveline, André Altmann
2023	J	`jnl`	Tackling the dimensions in imaging genetics with CLUB-PLS. CoRR André Altmann, Ana C. Lawry Aguila, Neda Jahanshad, Paul M. Thompson, Marco Lorenzi
2023	J	`jnl`	Transferability of Alzheimer's disease progression subtypes to an independent population cohort. NeuroImage Hanyi Chen, Alexandra L. Young, Neil P. Oxtoby, Frederik Barkhof, Daniel C. Alexander, André Altmann
2022	—	`conf`	Conditional VAEs for Confound Removal and Normative Modelling of Neurodegenerative Diseases. MICCAI (1) Ana Lawry Aguila, James Chapman, Mohammed Janahi, André Altmann
2022	J	`jnl`	Dynamic trajectories of connectome state transitions are heritable. NeuroImage Suhnyoung Jun, Thomas H. Alderson, André Altmann, Sepideh Sadaghiani
2022	—	`conf`	What PLS can still do for Imaging Genetics in Alzheimer's disease. BHI Federica Cruciani, André Altmann, Marco Lorenzi, Gloria Menegaz, Ilaria Boscolo Galazzo
2021	—	`conf`	Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer Labels. ASMUS@MICCAI Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu
2021	J	`jnl`	Development and evaluation of intraoperative ultrasound segmentation with negative image frames and multiple observer labels. CoRR Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu
2021	—	`conf`	Disentangling the association between genetics and functional connectivity in Mild Cognitive Impairment. BHI Heba Elshatoury, Federica Cruciani, Francesco Zumerle, Silvia Francesca Storti, André Altmann, Marco Lorenzi, Gholamreza Anbarjafari, Gloria Menegaz, Ilaria Boscolo Galazzo
2021	—	`conf`	Mining genetic, transcriptomic and imaging data in Parkinson's disease. ICHI Guglielmo Cerri, Manuel Tognon, André Altmann, Rosalba Giugno
2021	J	`jnl`	Network propagation of rare variants in Alzheimer's disease reveals tissue-specific hub genes and communities. PLoS Comput. Biol. Marzia Antonella Scelsi, Valerio Napolioni, Michael D. Greicius, André Altmann, Alzheimer's Disease Neuroimaging Initiative, Alzheimer's Disease Sequencing Project
2021	J	`jnl`	pySuStaIn: A Python implementation of the Subtype and Stage Inference algorithm. SoftwareX Leon M. Aksman, Peter A. Wijeratne, Neil P. Oxtoby, Arman Eshaghi, Cameron Shand, André Altmann, Daniel C. Alexander, Alexandra L. Young
2020	—	`conf`	Fed-BioMed: A General Open-Source Frontend Framework for Federated Learning in Healthcare. DART/DCL@MICCAI Santiago Silva, André Altmann, Boris Gutman, Marco Lorenzi
2019	—	`conf`	Evidence For Bias Of Genetic Ancestry In Resting State Functional MRI. ISBI André Altmann, Janaina Mourão Miranda
2019	—	`conf`	Federated Learning in Distributed Medical Databases: Meta-Analysis of Large-Scale Subcortical Brain Data. ISBI Santiago Silva, Boris A. Gutman, Eduardo Romero, Paul M. Thompson, André Altmann, Marco Lorenzi
2018	J	`jnl`	Federated Learning in Distributed Medical Databases: Meta-Analysis of Large-Scale Subcortical Brain Data. CoRR Santiago Silva, Boris Gutman, Eduardo Romero, Paul M. Thompson, André Altmann, Marco Lorenzi
2018	J	`jnl`	Susceptibility of brain atrophy to Proc. Natl. Acad. Sci. USA Marco Lorenzi, André Altmann, Boris Gutman, Selina Wray, Charles Arber, Derrek P. Hibar, Neda Jahanshad, Jonathan M. Schott, Daniel C. Alexander, Paul M. Thompson, Sébastien Ourselin
2016	—	`conf`	Partial least squares modelling for imaging-genetics in Alzheimer's disease: Plausibility and generalization. ISBI Marco Lorenzi, Boris Gutman, Derrek P. Hibar, André Altmann, Neda Jahanshad, Paul M. Thompson, Sébastien Ourselin
2016	J	`jnl`	Validation of non-REM sleep stage decoding from resting state fMRI using linear support vector machines. NeuroImage André Altmann, Manuel S. Schröter, Victor I. Spoormaker, S. A. Kiem, Denis Jordan, Rüdiger Ilg, Edward T. Bullmore, Michael D. Greicius, Michael Czisch, Philipp G. Sämann
2015	—	`conf`	Joint Feature Extraction from Functional Connectivity Graphs with Multi-task Feature Learning. PRNI André Altmann, Bernard Ng
2015	—	`conf`	Node-Based Gaussian Graphical Model for Identifying Discriminative Brain Regions from Connectivity Graphs. MLMI Bernard Ng, Anna-Clare Milazzo, André Altmann
2013	—	`conf`	Two Test Statistics for Cross-Modal Graph Community Significance. PRNI Jonas Richiardi, André Altmann, Michael D. Greicius
2011	J	`jnl`	vipR: variant identification in pooled DNA using R. Bioinform. André Altmann, Peter Weber, Carina Quast, Monika Rex-Haffner, Elisabeth B. Binder, Bertram Müller-Myhsok
2010	—	`—`	Bioinformatical approaches to ranking of anti-HIV combination therapies and planning of treatment schedules. André Altmann
2010	J	`jnl`	Chasing the AIDS virus. Commun. ACM Thomas Lengauer, André Altmann, Alexander Thielen, Rolf Kaiser
2010	J	`jnl`	Dealing with sparse data in predicting outcomes of HIV combination therapies. Bioinform. Jasmina Bogojeska, Steffen Bickel, André Altmann, Thomas Lengauer
2010	J	`jnl`	Permutation importance: a corrected feature importance measure. Bioinform. André Altmann, Laura Tolosi, Oliver Sander, Thomas Lengauer
2009	J	`jnl`	Bioinformatische Unterstützung der Auswahl von HIV-Therapien. Inform. Spektrum Thomas Lengauer, André Altmann, Alexander Thielen
2009	—	`conf`	Semi-Supervised Learning for Improving Prediction of HIV Drug Resistance. GCB Juliane Perner, André Altmann, Thomas Lengauer
2008	J	`jnl`	Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores. Bioinform. Jasmina Bogojeska, Adrian Alexa, André Altmann, Thomas Lengauer, Jörg Rahnenführer
2008	A	`conf`	Selecting anti-HIV therapies based on a variety of genomic and clinical factors. ISMB Michal Rosen-Zvi, André Altmann, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi, Thomas Lengauer