Andrzej Mizera

37 papers A* 2B 2C 1Misc 3Journal 22Unranked 7

Year	Rank	Type	Title / Venue / Authors
2026	A*	`conf`	The GATTACA Framework: Graph Neural Network-Based Reinforcement Learning for Controlling Biological Networks. AAAI Andrzej Mizera, Jakub Zarzycki
2025	J	`jnl`	Graph Neural Network-Based Reinforcement Learning for Controlling Biological Networks: The GATTACA Framework. CoRR Andrzej Mizera, Jakub Zarzycki
2025	J	`jnl`	pbn-STAC: Deep reinforcement learning-based framework for cellular reprogramming. Theor. Comput. Sci. Andrzej Mizera, Jakub Zarzycki
2024	A*	`conf`	Benchmarking Structural Inference Methods for Interacting Dynamical Systems with Synthetic Data. NeurIPS Aoran Wang, Tsz Pan Tong, Andrzej Mizera, Jun Pang
2024	J	`jnl`	Deep Reinforcement Learning for Controlled Traversing of the Attractor Landscape of Boolean Models in the Context of Cellular Reprogramming. CoRR Andrzej Mizera, Jakub Zarzycki
2023	J	`jnl`	Anomaly Detection Using Deep Learning Respecting the Resources on Board a CubeSat. J. Aerosp. Inf. Syst. Ross Horne, Sjouke Mauw, Andrzej Mizera, André Stemper, Jan Thoemel
2020	J	`jnl`	An Efficient Approach Towards the Source-Target Control of Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Soumya Paul, Cui Su, Jun Pang, Andrzej Mizera
2019	J	`jnl`	A new decomposition-based method for detecting attractors in synchronous Boolean networks. Sci. Comput. Program. Qixia Yuan, Andrzej Mizera, Jun Pang, Hongyang Qu
2019	J	`jnl`	GPU-accelerated steady-state computation of large probabilistic Boolean networks. Formal Aspects Comput. Andrzej Mizera, Jun Pang, Qixia Yuan
2019	J	`jnl`	Taming Asynchrony for Attractor Detection in Large Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
2018	J	`jnl`	A Decomposition-based Approach towards the Control of Boolean Networks (Technical Report). CoRR Soumya Paul, Cui Su, Jun Pang, Andrzej Mizera
2018	—	`conf`	A Decomposition-based Approach towards the Control of Boolean Networks. BCB Soumya Paul, Cui Su, Jun Pang, Andrzej Mizera
2018	—	`conf`	ASSA-PBN 3.0: Analysing Context-Sensitive Probabilistic Boolean Networks. CMSB Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
2018	J	`jnl`	ASSA-PBN: A Toolbox for Probabilistic Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Andrzej Mizera, Jun Pang, Cui Su, Qixia Yuan
2018	J	`jnl`	Reviving the Two-State Markov Chain Approach. IEEE ACM Trans. Comput. Biol. Bioinform. Andrzej Mizera, Jun Pang, Qixia Yuan
2017	Misc	`conf`	A New Decomposition Method for Attractor Detection in Large Synchronous Boolean Networks. SETTA Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
2017	J	`jnl`	Multi-Stability, Limit Cycles, and Period-Doubling Bifurcation with Reaction Systems. Int. J. Found. Comput. Sci. Sepinoud Azimi, Charmi Panchal, Andrzej Mizera, Ion Petre
2017	J	`jnl`	Taming Asynchrony for Attractor Detection in Large Boolean Networks (Technical Report). CoRR Andrzej Mizera, Jun Pang, Hongyang Qu, Qixia Yuan
2016	—	`conf`	ASSA-PBN 2.0: A Software Tool for Probabilistic Boolean Networks. CMSB Andrzej Mizera, Jun Pang, Qixia Yuan
2016	J	`jnl`	Fast Simulation of Probabilistic Boolean Networks (Technical Report). CoRR Andrzej Mizera, Jun Pang, Qixia Yuan
2016	—	`conf`	Fast Simulation of Probabilistic Boolean Networks. CMSB Andrzej Mizera, Jun Pang, Qixia Yuan
2016	Misc	`conf`	GPU-Accelerated Steady-State Computation of Large Probabilistic Boolean Networks. SETTA Andrzej Mizera, Jun Pang, Qixia Yuan
2016	J	`jnl`	Improving BDD-based attractor detection for synchronous Boolean networks. Sci. China Inf. Sci. Qixia Yuan, Hongyang Qu, Jun Pang, Andrzej Mizera
2016	Misc	`conf`	Parallel approximate steady-state analysis of large probabilistic Boolean networks. SAC Andrzej Mizera, Jun Pang, Qixia Yuan
2015	B	`conf`	ASSA-PBN: An Approximate Steady-State Analyser of Probabilistic Boolean Networks. ATVA Andrzej Mizera, Jun Pang, Qixia Yuan
2015	—	`conf`	Activity tracking: A new attack on location privacy. CNS Xihui Chen, Andrzej Mizera, Jun Pang
2015	—	`conf`	Improving BDD-based Attractor Detection for Synchronous Boolean Networks. Internetware Hongyang Qu, Qixia Yuan, Jun Pang, Andrzej Mizera
2015	J	`jnl`	Parallel Approximate Steady-state Analysis of Large Probabilistic Boolean Networks (Technical Report). CoRR Andrzej Mizera, Jun Pang, Qixia Yuan
2015	J	`jnl`	Reviving the Two-state Markov Chain Approach (Technical Report). CoRR Andrzej Mizera, Jun Pang, Qixia Yuan
2014	B	`conf`	Model-Checking Based Approaches to Parameter Estimation of Gene Regulatory Networks. ICECCS Andrzej Mizera, Jun Pang, Qixia Yuan
2012	J	`jnl`	A Boolean Approach for Disentangling the Roles of Submodules to the Global Properties of a Biomodel. Fundam. Informaticae Elena Czeizler, Andrzej Mizera, Ion Petre
2012	J	`jnl`	Quantitative Analysis of the Self-Assembly Strategies of Intermediate Filaments from Tetrameric Vimentin. IEEE ACM Trans. Comput. Biol. Bioinform. Eugen Czeizler, Andrzej Mizera, Elena Czeizler, Ralph-Johan Back, John E. Eriksson, Ion Petre
2012	J	`jnl`	Self-assembly Models of Variable Resolution. Trans. Comp. Sys. Biology Andrzej Mizera, Eugen Czeizler, Ion Petre
2011	J	`jnl`	A simple mass-action model for the eukaryotic heat shock response and its mathematical validation. Nat. Comput. Ion Petre, Andrzej Mizera, Claire L. Hyder, Annika Meinander, Andrey Mikhailov, Richard I. Morimoto, Lea Sistonen, John E. Eriksson, Ralph-Johan Back
2009	—	`conf`	A New Mathematical Model for the Heat Shock Response. Algorithmic Bioprocesses Ion Petre, Andrzej Mizera, Claire L. Hyder, Andrey Mikhailov, John E. Eriksson, Lea Sistonen, Ralph-Johan Back
2009	C	`conf`	Computational Heuristics for Simplifying a Biological Model. CiE Ion Petre, Andrzej Mizera, Ralph-Johan Back
2006	J	`jnl`	Applying dynamic Bayesian networks to perturbed gene expression data. BMC Bioinform. Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek Wilczynski, Jerzy Tiuryn