Andrzej Kloczkowski

45 papers B 1Misc 1Journal 18Unranked 23
YearRankTypeTitle / Venue / Authors
2025 — conf
Assessment of Chemical Scaffolds that Inhibit Mushroom Tyrosinase to Treat Melanogenesis Through Computational Approaches.
IWBBIO (1)
Mubashir Hassan, Saba Shahzadi, Andrzej Kloczkowski
2025 — conf
Computational Insights into the Role of Let-7a MicroRNAs in Ewing's Sarcoma.
IWBBIO (1)
Saba Shahzadi, Mubashir Hassan, Andrzej Kloczkowski
2025 — conf
Seder: Deep Learning Algorithm for Protein Structure Prediction.
IWBBIO (1)
Eshel Faraggi, Robert L. Jernigan, Andrzej Kloczkowski
2024 — conf
Bioinformatics Analysis Provides Insight into the Identification of miRNAs as Transcriptional Regulators in Respiratory Syncytial Virus Infection.
IWBBIO (1)
Saba Shahzadi, Mubashir Hassan, Andrzej Kloczkowski
2024 — conf
Bioinformatics-Based Analysis Provides a Deeper Understanding of How MicroRNAs Control Transcriptional Activity in Mumps Virus Infection.
IWBBIO (2)
Saba Shahzadi, Mubashir Hassan, Muhammad Shahzad Iqbal, Zainab Yaseen, Andrzej Kloczkowski
2024 — conf
Interpreting Respiratory Syncytial Virus (RSV) Nucleoprotein Mutations: A Structural and Functional Perspective.
IWBBIO (2)
Mubashir Hassan, Saba Shahzadi, Muhammad Yasir, Andrzej Kloczkowski
2024 — conf
Machine Learning-Based Tool for Efficient Discrimination Between Deleterious and Neutral Missense Mutations.
ICAISC (3)
Eshel Faraggi, Robert L. Jernigan, Andrzej Kloczkowski
2023 — conf
Computational Models for COVID-19 Dynamics Prediction.
ICAISC (2)
Andrzej Kloczkowski, Juan Luis Fernández Martínez, Zulima Fernández-Muñiz
2023 — conf
Pharmacoinformatic Analysis of Drug Leads for Alzheimer's Disease from FDA-Approved Dataset Through Drug Repositioning Studies.
IWBBIO (1)
Mubashir Hassan, Saba Shahzadi, Andrzej Kloczkowski
2023 — conf
Prediction of Functional Effects of Protein Amino Acid Mutations.
IWBBIO (2)
Óscar Álvarez-Machancoses, Eshel Faraggi, Enrique J. de Andrés-Galiana, Juan Luis Fernández Martínez, Andrzej Kloczkowski
2023 — conf
Structural Analysis of RNA-Binding Protein EWSR1 Involved in Ewing's Sarcoma Through Domain Assembly and Conformational Molecular Dynamics Studies.
IWBBIO (1)
Saba Shahzadi, Mubashir Hassan, Andrzej Kloczkowski
2022 J jnl
Analysis of transcriptomic responses to SARS-CoV-2 reveals plausible defective pathways responsible for increased susceptibility to infection and complications and helps to develop fast-track repositioning of drugs against COVID-19.
Comput. Biol. Medicine
Enrique J. deAndrés-Galiana, Juan Luis Fernández Martínez, Óscar Álvarez-Machancoses, Guillermina Bea, Carlos M. Galmarini, Andrzej Kloczkowski
2021 — ch.
A Hybrid Levenberg-Marquardt Algorithm on a Recursive Neural Network for Scoring Protein Models.
Artificial Neural Networks, 3rd Edition
Eshel Faraggi, Robert L. Jernigan, Andrzej Kloczkowski
2021 J jnl
DescribePROT: database of amino acid-level protein structure and function predictions.
Nucleic Acids Res.
Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan
2021 — ed.
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, Houston, TX, USA, December 9-12, 2021
BIBM
Yufei Huang, Lukasz A. Kurgan, Feng Luo, Xiaohua Hu, Yidong Chen, Edward R. Dougherty, Andrzej Kloczkowski, Yaohang Li
2020 J jnl
Identification of an Epidemiological Model to Simulate the COVID-19 Epidemic Using Robust Multiobjective Optimization and Stochastic Fractal Search.
Comput. Math. Methods Medicine
Fran Sérgio Lobato, Gustavo Barbosa Libotte, Gustavo Mendes Platt, Andrzej Kloczkowski
2020 Misc conf
Many-to-One Binding by Intrinsically Disordered Protein Regions.
PSB
Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker
2020 — conf
The Utilization of Different Classifiers to Perform Drug Repositioning in Inclusion Body Myositis Supports the Concept of Biological Invariance.
ICAISC (1)
Óscar Álvarez-Machancoses, Enrique J. deAndrés-Galiana, Juan Luis Fernández Martínez, Andrzej Kloczkowski
2019 — conf
Characteristics of Protein Fold Space Exhibits Close Dependence on Domain Usage.
IWBBIO (1)
Michael T. Zimmermann, Fadi Towfic, Robert L. Jernigan, Andrzej Kloczkowski
2019 — conf
Deciphering General Characteristics of Residues Constituting Allosteric Communication Paths.
IWBBIO (2)
Girik Malik, Anirban Banerji, Maksim Kouza, Irina Alexandra Buhimschi, Andrzej Kloczkowski
2019 J jnl
Entropy, Fluctuations, and Disordered Proteins.
Entropy
Eshel Faraggi, A. Keith Dunker, Robert L. Jernigan, Andrzej Kloczkowski
2018 — conf
On the Use of Principal Component Analysis and Particle Swarm Optimization in Protein Tertiary Structure Prediction.
ICAISC (2)
Óscar Álvarez, Juan Luis Fernández Martínez, Celia Fernández-Brillet, Ana Cernea, Zulima Fernández-Muñiz, Andrzej Kloczkowski
2018 J jnl
Principal component analysis in protein tertiary structure prediction.
J. Bioinform. Comput. Biol.
Óscar Álvarez, Juan Luis Fernández Martínez, Celia Fernández-Brillet, Ana Cernea, Zulima Fernández-Muñiz, Andrzej Kloczkowski
2018 — conf
Protein Tertiary Structure Prediction via SVD and PSO Sampling.
IWBBIO (1)
Óscar Álvarez, Juan Luis Fernández Martínez, Ana Cernea, María Zulima Fernández-Muñiz, Andrzej Kloczkowski
2016 J jnl
Fold-specific sequence scoring improves protein sequence matching.
BMC Bioinform.
Sumudu P. Leelananda, Andrzej Kloczkowski, Robert L. Jernigan
2016 J jnl
Predicting Designability of Small Proteins from Graph Features of Contact Maps.
J. Comput. Biol.
Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski
2016 J jnl
Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach.
BMC Bioinform.
Shamima Rashid, Saras Saraswathi, Andrzej Kloczkowski, Suresh Sundaram, Andrzej Kolinski
2015 B conf
Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models.
RECOMB
Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski
2015 J jnl
Multi-class BCGA-ELM based classifier that identifies biomarkers associated with hallmarks of cancer.
BMC Bioinform.
Vasily Sachnev, Saras Saraswathi, Rashid Niaz, Andrzej Kloczkowski, Suresh Sundaram
2014 J jnl
BioShell-Threading: versatile Monte Carlo package for protein 3D threading.
BMC Bioinform.
Pawel Gniewek, Andrzej Kolinski, Andrzej Kloczkowski, Dominik Gront
2013 — conf
Detection of onset of Alzheimer's disease from MRI images using a GA-ELM-PSO classifier.
CIMI
Saras Saraswathi, B. S. Mahanand, Andrzej Kloczkowski, Suresh Sundaram, N. Sundararajan
2012 J jnl
P.R.E.S.S. - an R-package for Exploring Residual-Level protein Structural Statistics.
J. Bioinform. Comput. Biol.
Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan, Zhijun Wu
2011 J jnl
MAVEN: Motion Analysis and Visualization of Elastic Networks and Structural Ensembles.
BMC Bioinform.
Michael T. Zimmermann, Andrzej Kloczkowski, Robert L. Jernigan
2011 — conf
P.R.E.S.S. - An R-package for exploring residual-level protein structural statistics.
BIBM Workshops
Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan, Zhijun Wu
2011 — conf
Particle Swarm Optimization: A Powerful Family of Stochastic Optimizers. Analysis, Design and Application to Inverse Modelling.
ICSI (1)
Juan Luis Fernández Martínez, Esperanza García Gonzalo, Saras Saraswathi, Robert L. Jernigan, Andrzej Kloczkowski
2010 — conf
An Extreme Learning Machine Classifier for Prediction of Relative Solvent Accessibility in Proteins.
IJCCI (ICFC-ICNC)
Saras Saraswathi, Andrzej Kloczkowski, Robert L. Jernigan
2010 — conf
Immunoglobulin functional motions and their effects on the complementarity determining regions.
BCB
Michael T. Zimmermann, Aris Skliros, Saras Saraswathi, Andrzej Kloczkowski, Robert L. Jernigan
2010 — conf
Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos.
BCB
Ataur R. Katebi, Pawel Gniewek, Michael T. Zimmermann, Saras Saraswathi, Zhenming Gong, Christopher K. Tuggle, Andrzej Kloczkowski, Robert L. Jernigan
2010 J jnl
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials.
BMC Bioinform.
Yaping Feng, Andrzej Kloczkowski, Robert L. Jernigan
2010 — conf
Protein Secondary Structure Prediction using Knowledge-based Potentials.
IJCCI (ICFC-ICNC)
Saras Saraswathi, Robert L. Jernigan, Andrzej Kloczkowski, Andrzej Kolinski
2008 J jnl
Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable.
BMC Bioinform.
Myron Peto, Andrzej Kloczkowski, Vasant G. Honavar, Robert L. Jernigan
2007 J jnl
Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM).
Bioinform.
Haitao Cheng, Taner Z. Sen, Robert L. Jernigan, Andrzej Kloczkowski
2006 J jnl
Functional clustering of yeast proteins from the protein-protein interaction network.
BMC Bioinform.
Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan
2005 J jnl
GOR V server for protein secondary structure prediction.
Bioinform.
Taner Z. Sen, Robert L. Jernigan, Jean Garnier, Andrzej Kloczkowski
2004 J jnl
Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.
BMC Bioinform.
Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan, Changhui Yan, Vasant G. Honavar, Kai-Ming Ho, Cai-Zhuang Wang, Yungok Ihm, Haibo Cao, Xun Gu, Drena Dobbs