Andrey Alekseenko

14 papers B 1Journal 7Unranked 6
YearRankTypeTitle / Venue / Authors
2025 — conf
Redesigning GROMACS Halo Exchange: Improving Strong Scaling with GPU-initiated NVSHMEM.
SC Workshops
Mahesh Doijade, Andrey Alekseenko, Ania Brown, Alan Gray, Szilárd Páll
2025 J jnl
Redesigning GROMACS Halo Exchange: Improving Strong Scaling with GPU-initiated NVSHMEM.
CoRR
Mahesh Doijade, Andrey Alekseenko, Ania Brown, Alan Gray, Szilárd Páll
2024 — conf
GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability.
CUG
Andrey Alekseenko, Szilárd Páll, Erik Lindahl
2024 J jnl
GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability.
CoRR
Andrey Alekseenko, Szilárd Páll, Erik Lindahl
2023 — conf
Comparing the Performance of SYCL Runtimes for Molecular Dynamics Applications.
IWOCL
Andrey Alekseenko, Szilárd Páll
2021 — conf
Experiences With Adding SYCL Support to GROMACS.
IWOCL
Andrey Alekseenko, Szilárd Páll, Erik Lindahl
2020 J jnl
Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4.
J. Comput. Aided Mol. Des.
Sergei Kotelnikov, Andrey Alekseenko, Cong Liu, Mikhail Ignatov, Dzmitry Padhorny, Emiliano Brini, Mark Lukin, Evangelos A. Coutsias, Ken A. Dill, Dima Kozakov
2019 J jnl
ITS+DM Hackathon (ITSC 2017): Lane Departure Prediction With Naturalistic Driving Data.
IEEE Intell. Transp. Syst. Mag.
Andrey Alekseenko, Hien Q. Dang, Gaurav Bansal, Javier J. Sánchez Medina, Chiyomi Miyajima, Takatsugu Hirayama, Kazuya Takeda, Ichiro Ide
2019 J jnl
Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge.
J. Comput. Aided Mol. Des.
Mikhail Ignatov, Cong Liu, Andrey Alekseenko, Zhuyezi Sun, Dzmitry Padhorny, Sergei Kotelnikov, Andrey M. Kazennov, Ivan Grebenkin, Yaroslav Kholodov, Istvan Kolosvari, Alberto Pérez, Ken A. Dill, Dima Kozakov
2018 B conf
Bayesian Framework for Vehicle Localization Using Crowdsourced Data.
Intelligent Vehicles Symposium
Sergey Verentsov, Emil Magerramov, Vlad Vinogradov, Ramil Gizatullin, Andrey Alekseenko, Yaroslav Kholodov, Evgeniy Nikolskiy
2018 J jnl
Protein-ligand docking using FFT based sampling: D3R case study.
J. Comput. Aided Mol. Des.
Dzmitry Padhorny, David R. Hall, Hanieh Mirzaei, Artem B. Mamonov, Mohammad Moghadasi, Andrey Alekseenko, Dmitri Beglov, Dima Kozakov
2017 — conf
Adaptive traffic light control on highway entrances.
ITSC
Andrey Alekseenko, Yaroslav Kholodov, Aleksander Kholodov, Yuri V. Chekhovich, Vsevolod Starozhilets
2017 — conf
Bayesian Localization for Autonomous Vehicle using Sensor Fusion and Traffic Signs.
ICRAI
Sergey Verentsov, Emil Magerramov, Vlad Vinogradov, Ramil Gizatullin, Andrey Alekseenko, Yaroslav Kholodov, Evgeniy Nikolskiy
2016 J jnl
SOP-GPU: influence of solvent-induced hydrodynamic interactions on dynamic structural transitions in protein assemblies.
J. Comput. Chem.
Andrey Alekseenko, Olga Kononova, Yaroslav Kholodov, Kenneth A. Marx, Valeri Barsegov