Andrey A. Mironov

31 papers B 2C 1Journal 23Unranked 5

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale. Bioinform. Asia Mendelevich, Saumya Gupta, Aleksei Pakharev, Athanasios Teodosiadis, Andrey A. Mironov, Alexander A. Gimelbrant
2023	J	`jnl`	RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome. Database J. Biol. Databases Curation Grigory Ryabykh, S. V. Kuznetsov, Y. D. Korostelev, Andrey I Sigorskih, A. A. Zharikova, Andrey A. Mironov
2021	J	`jnl`	An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. PLoS Comput. Biol. Andrey A. Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine
2018	J	`jnl`	Coloc-stats: a unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Res. Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve
2017	J	`jnl`	StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data. Bioinform. Elena D. Stavrovskaya, Tejasvi Niranjan, Elana J. Fertig, Sarah J. Wheelan, Alexander V. Favorov, Andrey A. Mironov
2014	J	`jnl`	RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments. Bioinform. Ruslan A. Soldatov, Svetlana V. Vinogradova, Andrey A. Mironov
2013	—	`conf`	Fast assessment of the correlation between coverage-like genomic features and its statistical significance. IWBBIO Elena D. Stavrovskaya, Andrey A. Mironov, Alexander V. Favorov
2012	—	`conf`	A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure. BIOINFORMATICS Anna A. Nilulova, Alexander V. Favorov, Vsevolod J. Makeev, Andrey A. Mironov
2012	—	`conf`	Automated Regulon Content Prediction and Estimation of PWM Quality. BIOINFORMATICS Elena D. Stavrovskaya, Andrey A. Mironov, Dmitry A. Rodionov, Inna Dubchak, Pavel S. Novichkov
2012	B	`conf`	Evidence for Widespread Association of Mammalian Splicing and Conserved Long-Range RNA Structures. RECOMB Dmitri D. Pervouchine, Ekaterina Khrameeva, Marina Pichugina, Olexii Nikolaienko, Mikhail S. Gelfand, Petr Rubtsov, Andrey A. Mironov
2012	J	`jnl`	Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. PLoS Comput. Biol. Alexander V. Favorov, Loris Mularoni, Leslie M. Cope, Yulia A. Medvedeva, Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan
2010	J	`jnl`	An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies. Algorithms Mol. Biol. Pavel V. Mazin, Mikhail S. Gelfand, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Anatoly R. Rubinov, Robert B. Russell, Olga V. Kalinina
2010	J	`jnl`	RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. Pavel S. Novichkov, Dmitry A. Rodionov, Elena D. Stavrovskaya, Elena S. Novichkova, Alexei E. Kazakov, Mikhail S. Gelfand, Adam P. Arkin, Andrey A. Mironov, Inna Dubchak
2009	—	`conf`	Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk). ISBRA Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak
2007	J	`jnl`	RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res. Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam P. Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak
2006	J	`jnl`	An Overview of the Algorithmic Session of MCCMB'05. J. Bioinform. Comput. Biol. Gregory Kucherov, Andrey A. Mironov, Mikhail A. Roytberg
2006	J	`jnl`	Rnakinetics: a Web Server that Models Secondary Structure Kinetics of an Elongating RNA. J. Bioinform. Comput. Biol. Ludmila V. Danilova, Dmitri D. Pervouchine, Alexander V. Favorov, Andrey A. Mironov
2005	J	`jnl`	A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. Bioinform. Alexander V. Favorov, Mikhail S. Gelfand, Anna V. Gerasimova, Dmitry A. Ravcheev, Andrey A. Mironov, Vsevolod J. Makeev
2005	J	`jnl`	Alternative splicing and protein function. BMC Bioinform. A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov
2004	J	`jnl`	SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Res. Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova
2003	J	`jnl`	Two genetic algorithms for identification of regulatory signals. Silico Biol. Elena D. Stavrovskaya, Andrey A. Mironov
2002	J	`jnl`	Exact mapping of prokaryotic gene starts. Briefings Bioinform. M. V. Baytaluk, Mikhail S. Gelfand, Andrey A. Mironov
2001	J	`jnl`	Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinform. Pavel S. Novichkov, Mikhail S. Gelfand, Andrey A. Mironov
2001	J	`jnl`	Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. Bioinform. Andrey A. Mironov, Pavel S. Novichkov, Mikhail S. Gelfand
2000	J	`jnl`	Comparative Analysis of Regulatory Patterns in Bacterial Genomes. Briefings Bioinform. Mikhail S. Gelfand, Pavel S. Novichkov, Elena S. Novichkova, Andrey A. Mironov
1998	J	`jnl`	Algorithms and software for support of gene identification experiments. Bioinform. Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner
1998	—	`conf`	Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. German Conference on Bioinformatics Dmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand
1998	C	`conf`	SST versus EST in Gene Recognition (Invited Paper). SPIRE Andrey A. Mironov, Pavel A. Pevzner
1996	B	`conf`	Spliced Alignment: A New Approach to Gene Recognition. CPM Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner
1995	J	`jnl`	DNASUN: a package of computer programs for the biotechnology laboratory. Comput. Appl. Biosci. Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner
1990	J	`jnl`	Mapping DNA by stochastic relaxation: a new approach to fragment sizes. Comput. Appl. Biosci. A. V. Grigorjev, Andrey A. Mironov