Andrew S. Allen

15 papers B 1Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Bayesian estimation of allele-specific expression in the presence of phasing uncertainty.
Bioinform.
Xue Zou, Zachary W. Gomez, Timothy E. Reddy, Andrew S. Allen, William H. Majoros
2022 J jnl
Focused goodness of fit tests for gene set analyses.
Briefings Bioinform.
Mengqi Zhang, Sahar Gelfman, Cristiane Araujo Martins Moreno, Janice M. McCarthy, Matthew B. Harms, David B. Goldstein, Andrew S. Allen
2021 J jnl
A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors.
Bioinform.
Kevin A. Murgas, Yanlin Ma, Lidea K. Shahidi, Sayan Mukherjee, Andrew S. Allen, Darryl Shibata, Marc D. Ryser
2020 J jnl
Bayesian estimation of genetic regulatory effects in high-throughput reporter assays.
Bioinform.
William H. Majoros, Young-Sook Kim, Alejandro Barrera, Fan Li, Xingyan Wang, Sarah J. Cunningham, Graham D. Johnson, Cong Guo, William L. Lowe, Denise M. Scholtens, M. Geoffrey Hayes, Timothy E. Reddy, Andrew S. Allen
2019 J jnl
Efficient estimation of grouped survival models.
BMC Bioinform.
Zhiguo Li, Jiaxing Lin, Alexander B. Sibley, Tracy Truong, Katherina C. Chua, Yu Jiang, Janice M. McCarthy, Deanna L. Kroetz, Andrew S. Allen, Kouros Owzar
2018 J jnl
bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens.
Bioinform.
Jiaxing Lin, Jeremy Gresham, Tongrong Wang, So Young Kim, James Alvarez, Jeffrey S. Damrauer, Scott Floyd, Joshua A. Granek, Andrew S. Allen, Cliburn Chan, Jichun Xie, Kouros Owzar
2018 J jnl
meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays.
PLoS Comput. Biol.
Sahar Gelfman, Quanli Wang, Yi-Fan Lu, Diana Hall, Christopher D. Bostick, Ryan Dhindsa, Matt Halvorsen, K. Melodi McSweeney, Ellese Cotterill, Tom Edinburgh, Michael A. Beaumont, Wayne N. Frankel, Slavé Petrovski, Andrew S. Allen, Michael J. Boland, David B. Goldstein, Stephen J. Eglen
2017 J jnl
High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.
Bioinform.
William H. Majoros, Michael Campbell, Carson Holt, Erin K. DeNardo, Doreen Ware, Andrew S. Allen, Mark Yandell, Timothy E. Reddy
2017 J jnl
Mapping eQTL by leveraging multiple tissues and DNA methylation.
BMC Bioinform.
Chaitanya R. Acharya, Kouros Owzar, Andrew S. Allen
2017 B conf
Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding.
RECOMB
Jingkang Zhao, Dongshunyi Li, Jungkyun Seo, Andrew S. Allen, Raluca Gordân
2016 J jnl
Exploiting expression patterns across multiple tissues to map expression quantitative trait loci.
BMC Bioinform.
Chaitanya R. Acharya, Janice M. McCarthy, Kouros Owzar, Andrew S. Allen
2014 — —
Ruratae: a physics-based audio engine.
Andrew S. Allen
2013 J jnl
Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression.
PLoS Comput. Biol.
Nanye Long, Samuel P. Dickson, Jessica M. Maia, Hee Shin Kim, Qianqian Zhu, Andrew S. Allen
2011 J jnl
SVA: software for annotating and visualizing sequenced human genomes.
Bioinform.
Dongliang Ge, Elizabeth K. Ruzzo, Kevin V. Shianna, Min He, Kimberly Pelak, Erin L. Heinzen, Anna C. Need, Elizabeth T. Cirulli, Jessica M. Maia, Samuel P. Dickson, Mingfu Zhu, Abanish Singh, Andrew S. Allen, David B. Goldstein
2008 — conf
Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies.
ISBRA
Andrew S. Allen