Andrew R. Jones

27 papers Journal 19Unranked 2

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Signal Detection for Drug Safety Fusing Spontaneous Reporting System and Social Media. SDF Yifan Zhou, Matthew Bright, John Heap, Andrew R. Jones, Munir Pirmohamed, Simon Maskell
2022	J	`jnl`	Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PLoS Comput. Biol. Shengbo Wang, David García-Seisdedos, Ananth Prakash, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Silvie Fexova, Pablo A. Moreno, Irene Papatheodorou, Andrew R. Jones, Juan Antonio Vizcaíno
2022	J	`jnl`	VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. Nucleic Acids Res. Beatrice Amos, Cristina Aurrecoechea, Matthieu Barba, Ana Barreto, Evelina Y. Basenko, Wojciech Bazant, Robert Belnap, Ann S. Blevins, Ulrike Böhme, John Brestelli, Brian P. Brunk, Mark J. Caddick, Danielle Callan, Lahcen I. Campbell, Mikkel B. Christensen, George K. Christophides, Kathryn Crouch, Kristina Davis, Jeremy D. DeBarry, Ryan Doherty, Yikun Duan, Michael Dunn, Dave Falke, Steve Fisher, Paul Flicek, Brett Fox, Bindu Gajria, Gloria I. Giraldo-Calderón, Omar S. Harb, Elizabeth Harper, Christiane Hertz-Fowler, Mark J. Hickman, Connor Howington, Sufen Hu, Jay C. Humphrey, John Iodice, Andrew R. Jones, John Judkins, Sarah A. Kelly, Jessica C. Kissinger, Dae Kun Kwon, Kristopher Lamoureux, Daniel Lawson, Wei Li, Kallie Lies, Disha Lodha, Jamie Long, Robert M. MacCallum, Gareth Maslen, Mary Ann McDowell, Jaroslaw Nabrzyski, David S. Roos, Samuel S. C. Rund, Stephanie wever Schulman, Achchuthan Shanmugasundram, Vasily Sitnik, Drew Spruill, David Starns, Christian J. Stoeckert Jr., Sheena Shah Tomko, Haiming Wang, Susanne Warrenfeltz, Robert Wieck, Paul A. Wilkinson, Lin Xu, Jie Zheng
2021	J	`jnl`	An OMICs-based meta-analysis to support infection state stratification. Bioinform. Ashleigh C. Myall, Simon Perkins, David Rushton, Jonathan David, Phillippa Spencer, Andrew R. Jones, Philipp Antczak
2021	J	`jnl`	MHCVision: estimation of global and local false discovery rate for MHC class I peptide binding prediction. Bioinform. Phorutai Pearngam, Sira Sriswasdi, Trairak Pisitkun, Andrew R. Jones
2020	J	`jnl`	Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools. Nucleic Acids Res. Faviel F. Gonzalez-Galarza, Antony McCabe, Eduardo José Melo dos Santos, James Jones, Louise Y. C. Takeshita, Nestor D. Ortega-Rivera, Glenda M. Del Cid-Pavon, Kerry Ramsbottom, Gurpreet S. Ghattaoraya, Ana Alfirevic, Derek Middleton, Andrew R. Jones
2016	J	`jnl`	A web resource for mining HLA associations with adverse drug reactions: HLA-ADR. Database J. Biol. Databases Curation Gurpreet S. Ghattaoraya, Yenal Dundar, Faviel F. Gonzalez-Galarza, Maria Helena Thomaz Maia, Eduardo José Melo dos Santos, Andrea Luciana Soares da Silva, Antony McCabe, Derek Middleton, Ana Alfirevic, Rumona Dickson, Andrew R. Jones
2016	—	`ch.`	Chapter 11. Data Formats of the Proteomics Standards Initiative. Proteome Informatics Juan Antonio Vizcaíno, Simon Perkins, Andrew R. Jones, Eric W. Deutsch
2016	—	`ch.`	Chapter 15. Proteogenomics: Proteomics for Genome Annotation. Proteome Informatics Fawaz Ghali, Andrew R. Jones
2016	—	`ch.`	Chapter 5. Protein Inference and Grouping. Proteome Informatics Andrew R. Jones
2015	J	`jnl`	Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations. Nucleic Acids Res. Faviel F. Gonzalez-Galarza, Louise Y. C. Takeshita, Eduardo José Melo dos Santos, Felicity Kempson, Maria Helena Thomaz Maia, Andrea Luciana Soares da Silva, André Luiz Teles e Silva, Gurpreet S. Ghattaoraya, Ana Alfirevic, Andrew R. Jones, Derek Middleton
2015	J	`jnl`	Development of data representation standards by the human proteome organization proteomics standards initiative. J. Am. Medical Informatics Assoc. Eric W. Deutsch, Juan P. Albar, Pierre-Alain Binz, Martin Eisenacher, Andrew R. Jones, Gerhard Mayer, Gilbert S. Omenn, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob
2014	J	`jnl`	An integrated approach to understand apicomplexan metabolism from their genomes. BMC Bioinform. Achchuthan Shanmugasundram, Faviel F. Gonzalez-Galarza, Jonathan M. Wastling, Olga Vasieva, Andrew R. Jones
2013	J	`jnl`	A database for curating the associations between killer cell immunoglobulin-like receptors and diseases in worldwide populations. Database J. Biol. Databases Curation Louise Y. C. Takeshita, Faviel F. Gonzalez-Galarza, Eduardo José Melo dos Santos, Maria Helena Thomaz Maia, Mushome M. Rahman, Syed M. S. Zain, Derek Middleton, Andrew R. Jones
2013	J	`jnl`	Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites. Nucleic Acids Res. Achchuthan Shanmugasundram, Faviel F. Gonzalez-Galarza, Jonathan M. Wastling, Olga Vasieva, Andrew R. Jones
2013	J	`jnl`	The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. Database J. Biol. Databases Curation Gerhard Mayer, Luisa Montecchi-Palazzi, David Ovelleiro, Andrew R. Jones, Pierre-Alain Binz, Eric W. Deutsch, Matthew Chambers, Marius Kallhardt, Fredrik Levander, James Shofstahl, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob, Christian Stephan, Helmut E. Meyer, Martin Eisenacher
2011	J	`jnl`	Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res. Faviel F. Gonzalez-Galarza, Stephen Christmas, Derek Middleton, Andrew R. Jones
2010	—	`ch.`	An Introduction to Proteome Bioinformatics. Proteome Bioinformatics Andrew R. Jones, Simon J. Hubbard
2010	—	`ch.`	Managing Experimental Data Using FuGE. Proteome Bioinformatics Andrew R. Jones, Allyson L. Lister
2010	—	`book`	Proteome Bioinformatics Simon J. Hubbard, Andrew R. Jones
2009	J	`jnl`	FuGEFlow: data model and markup language for flow cytometry. BMC Bioinform. Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones, Frank J. Manion, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman
2008	J	`jnl`	A toolkit for capturing and sharing FuGE experiments. Bioinform. Khalid Belhajjame, Andrew R. Jones, Norman W. Paton
2007	J	`jnl`	Pride Wizard: generation of standards compliant quantitative proteomics data. BMC Syst. Biol. Neil Swainston, Jennifer A. Siepen, Andrew R. Jones, Sarah R. Hart, Henning Hermjakob, Philip Jones, Simon J. Hubbard
2006	—	`conf`	Data Access and Integration in the ISPIDER Proteomics Grid. DILS Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer A. Siepen, Andrew R. Jones, Nigel J. Martin, Alexandra Poulovassilis, Simon J. Hubbard, Suzanne M. Embury, Norman W. Paton
2005	J	`jnl`	An analysis of extensible modelling for functional genomics data. BMC Bioinform. Andrew R. Jones, Norman W. Paton
2004	J	`jnl`	An object model and database for functional genomics. Bioinform. Andrew R. Jones, Ela Hunt, Jonathan M. Wastling, Angel D. Pizarro, Christian J. Stoeckert Jr.
1996	J	`jnl`	A Combinatorial Approach to the Double Cosets of the Symmetric Group with respect to Young Subgroups. Eur. J. Comb. Andrew R. Jones