Andrew Leaver-Fay

13 papers C 2Misc 1Journal 7Unranked 2
YearRankTypeTitle / Venue / Authors
2020 J jnl
Better together: Elements of successful scientific software development in a distributed collaborative community.
PLoS Comput. Biol.
Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau
2017 J jnl
A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design.
PLoS Comput. Biol.
Rebecca F. Alford, Andrew Leaver-Fay, Lynda Gonzales, Erin L. Dolan, Jeffrey J. Gray
2017 J jnl
Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta.
Bioinform.
Robert Kleffner, Jeff Flatten, Andrew Leaver-Fay, David Baker, Justin B. Siegel, Firas Khatib, Seth Cooper
2010 J jnl
Predicting protein structures with a multiplayer online game.
Nat.
Seth Cooper, Firas Khatib, Adrien Treuille, Janos Barbero, Jeehyung Lee, Michael Beenen, Andrew Leaver-Fay, David Baker, Zoran Popovic, Foldit players
2010 C conf
The challenge of designing scientific discovery games.
FDG
Seth Cooper, Adrien Treuille, Janos Barbero, Andrew Leaver-Fay, Kathleen Tuite, Firas Khatib, Alex Cho Snyder, Michael Beenen, David Salesin, David Baker, Zoran Popovic
2008 — conf
On-the-Fly Rotamer Pair Energy Evaluation in Protein Design.
ISBRA
Andrew Leaver-Fay, Jack Snoeyink, Brian Kuhlman
2007 J jnl
Faster placement of hydrogens in protein structures by dynamic programming.
ACM J. Exp. Algorithmics
Andrew Leaver-Fay, Yuanxin Liu, Jack Snoeyink, Xueyi Wang
2007 J jnl
Maintaining solvent accessible surface area under rotamer substitution for protein design.
J. Comput. Chem.
Andrew Leaver-Fay, Glenn L. Butterfoss, Jack Snoeyink, Brian Kuhlman
2007 J jnl
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.
Nucleic Acids Res.
Ian W. Davis, Andrew Leaver-Fay, Vincent B. Chen, Jeremy N. Block, Gary J. Kapral, Xueyi Wang, Laura Weston Murray, W. Bryan Arendall III, Jack Snoeyink, Jane S. Richardson, David C. Richardson
2006 — —
Capturing Atomic Interactions with a Graphical Framework in Computational Protein Design.
Andrew Leaver-Fay
2005 Misc conf
An Adaptive Dynamic Programming Algorithm for the Side Chain Placement Problem.
Pacific Symposium on Biocomputing
Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink
2005 C conf
Rotamer-Pair Energy Calculations Using a Trie Data Structure.
WABI
Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink
2004 — conf
Faster Placement of Hydrogens in Protein Structures by Dynamic Programming.
ALENEX/ANALC
Andrew Leaver-Fay, Yuanxin Liu, Jack Snoeyink