Andrew K. Smith

11 papers Journal 7Unranked 4

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Generating Visualizations Conversationally using Guided Autocomplete and LLMs. J. Open Source Softw. Andrew K. Smith, Isaac Neuhaus
2023	J	`jnl`	TransONet: Automatic Segmentation of Vasculature in Computed Tomographic Angiograms Using Deep Learning. CoRR Alireza Bagheri Rajeoni, Breanna Pederson, Ali Firooz, Hamed Abdollahi, Andrew K. Smith, Daniel G. Clair, Susan M. Lessner, Homayoun Valafar
2020	J	`jnl`	Contrasting model mechanisms of alanine aminotransferase (ALT) release from damaged and necrotic hepatocytes as an example of general biomarker mechanisms. PLoS Comput. Biol. Andrew K. Smith, Glen E. P. Ropella, Mitchell R. McGill, Preethi Krishnan, Lopamudra Dutta, Ryan C. Kennedy, Hartmut Jaeschke, C. Anthony Hunt
2016	J	`jnl`	Competing Mechanistic Hypotheses of Acetaminophen-Induced Hepatotoxicity Challenged by Virtual Experiments. PLoS Comput. Biol. Andrew K. Smith, Brenden K. Petersen, Glen E. P. Ropella, Ryan C. Kennedy, Neil Kaplowitz, Murad Ookhtens, C. Anthony Hunt
2016	—	`conf`	Virtual experiments help explain intra- and inter-strain variability of AILI-induced hepatic necrosis in mice. SpringSim (ADS) Andrew K. Smith, Glen E. P. Ropella, C. Anthony Hunt, Neil Kaplowitz, Murad Ookhtens
2014	—	`conf`	Mechanistic agent-based damage and repair models as hypotheses for patterns of necrosis caused by drug induced liver injury. SummerSim Andrew K. Smith, Glen E. P. Ropella, Neil Kaplowitz, Murad Ookhtens, C. Anthony Hunt
2007	J	`jnl`	Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. Bioinform. Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein
2007	J	`jnl`	LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinform. Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein
2005	J	`jnl`	Editorial. Nucleic Acids Res. Dov Greenbaum, Andrew K. Smith, Mark Gerstein
2005	—	`conf`	YeastHub: a semantic web use case for integrating data in the life sciences domain. ISMB (Supplement of Bioinformatics) Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein
2004	—	`conf`	A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data. METMBS Kei-Hoi Cheung, Deyun Pan, Andrew K. Smith, Michael R. Seringhaus, Shawn M. Douglas, Mark Gerstein