Andrew J. Bordner

11 papers Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2012 J jnl
Predicting the effects of amino acid replacements in peptide hormones on their binding affinities for class B GPCRs and application to the design of secretin receptor antagonists.
J. Comput. Aided Mol. Des.
Jerez A. Te, Maoqing Dong, Laurence J. Miller, Andrew J. Bordner
2011 J jnl
Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model.
J. Comput. Aided Mol. Des.
Andrew J. Bordner, Barry Zorman, Ruben Abagyan
2010 — conf
Kernelling Method for Identifying Near-Native Protein Decoy Structures.
BIOCOMP
Xiuping Tao, Andrew J. Bordner, Thomas C. Schulthess, Andrey A. Gorin
2010 J jnl
MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes.
BMC Bioinform.
Andrew J. Bordner, Hans D. Mittelmann
2010 J jnl
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design.
BMC Bioinform.
Andrew J. Bordner
2010 J jnl
Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model.
BMC Bioinform.
Andrew J. Bordner, Hans D. Mittelmann
2009 J jnl
Predicting protein-protein binding sites in membrane proteins.
BMC Bioinform.
Andrew J. Bordner
2008 J jnl
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.
BMC Bioinform.
Andrew J. Bordner, Andrey A. Gorin
2008 J jnl
Predicting small ligand binding sites in proteins using backbone structure.
Bioinform.
Andrew J. Bordner
2005 J jnl
REVCOM: a robust Bayesian method for evolutionary rate estimation.
Bioinform.
Andrew J. Bordner, Ruben Abagyan
2003 J jnl
Boundary element solution of the linear Poisson-Boltzmann equation and a multipole method for the rapid calculation of forces on macromolecules in solution.
J. Comput. Chem.
Andrew J. Bordner, Gary A. Huber