Andrew I. Su - RankMe

49 papers Misc 2Journal 39Unranked 8

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A case-based explainable graph neural network framework for mechanistic drug repositioning. Bioinform. Adriana Carolina Gonzalez-Cavazos, Roger Tu, Meghamala Sinha, Andrew I. Su
2025	J	`jnl`	The NIAID Discovery Portal: A Unified Search Engine for Infectious and Immune-Mediated Disease Datasets. CoRR Ginger Tsueng, Emily Bullen, Candice Czech, Dylan Welzel, Leandro Collares, Jason Lin, Everaldo Rodrigo Rodolpho, Zubair Qazi, Nichollette Acosta, Lisa M. Mayer, Sudha Venkatachari, Zorana Mitrovic Vucicevic, Poromendro N. Burman, Deepti Jain, Jack DiGiovanna, Maria Giovanni, Asiyah Lin, Wilbert Van Panhuis, Laura D. Hughes, Andrew I. Su, Chunlei Wu
2023	J	`jnl`	BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. Bioinform. Jackson Callaghan, Colleen H. Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, Eric Zhou, Rohan Juneja, Yao Yao, Madhumita Narayan, Kristina Hanspers, Ayushi Agrawal, Alexander R. Pico, Chunlei Wu, Andrew I. Su
2023	J	`jnl`	BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. CoRR Jackson Callaghan, Colleen H. Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, Eric Zhou, Rohan Juneja, Yao Yao, Madhumita Narayan, Kristina Hanspers, Ayushi Agrawal, Alexander R. Pico, Chunlei Wu, Andrew I. Su
2023	J	`jnl`	Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data. BMC Bioinform. Marco Alvarado Cano, Ginger Tsueng, Xinghua Zhou, Jiwen Xin, Laura D. Hughes, Julia Mullen, Andrew I. Su, Chunlei Wu
2022	J	`jnl`	BioThings SDK: a toolkit for building high-performance data APIs in biomedical research. Bioinform. Sebastien Lelong, Xinghua Zhou, Cyrus Afrasiabi, Zhongchao Qian, Marco Alvarado Cano, Ginger Tsueng, Jiwen Xin, Julia Mullen, Yao Yao, Ricardo Avila, Greg Taylor, Andrew I. Su, Chunlei Wu
2022	J	`jnl`	Design and application of a knowledge network for automatic prioritization of drug mechanisms. Bioinform. Michael Mayers, Roger Tu, Dylan Steinecke, Tong Shu Li, Núria Queralt-Rosinach, Andrew I. Su
2020	J	`jnl`	Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts. Bioinform. Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
2020	J	`jnl`	Structured reviews for data and knowledge-driven research. Database J. Biol. Databases Curation Núria Queralt-Rosinach, Gregory S. Stupp, Tong Shu Li, Michael Mayers, Maureen E. Hoatlin, Matthew Might, Benjamin M. Good, Andrew I. Su
2019	J	`jnl`	Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements. Hum. Comput. Ginger Tsueng, Arun Kumar, Max Nanis, Andrew I. Su
2019	—	`conf`	Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts. AKBC Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
2019	J	`jnl`	ChlamBase: a curated model organism database for the Chlamydia research community. Database J. Biol. Databases Curation Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Gregory S. Stupp, Andra Waagmeester, Benjamin M. Good, Chunlei Wu, Andrew I. Su
2019	J	`jnl`	ChlamBase: a curated model organism database for the Chlamydia research community. Database J. Biol. Databases Curation Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Chunlei Wu, Andrew I. Su
2019	J	`jnl`	Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network. BMC Bioinform. Michael Mayers, Tong Shu Li, Núria Queralt-Rosinach, Andrew I. Su
2018	J	`jnl`	Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration. BMC Bioinform. Jiwen Xin, Cyrus Afrasiabi, Sebastien Lelong, Julee Adesara, Ginger Tsueng, Andrew I. Su, Chunlei Wu
2018	J	`jnl`	The Healthy Pregnancy Research Program: transforming pregnancy research through a ResearchKit app. npj Digit. Medicine Jennifer M. Radin, Steven R. Steinhubl, Andrew I. Su, Hansa Bhargava, Benjamin Greenberg, Brian M. Bot, Megan Doerr, Eric J. Topol
2018	—	`conf`	Wikidata as an intuitive resource towards semantic data modeling in data FAIRification. SWAT4LS Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Gregory S. Stupp, Lynn M. Schriml, Mark Thompson, Andrew I. Su, Marco Roos
2017	J	`jnl`	WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database J. Biol. Databases Curation Tim E. Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan A. Dunn, Monica C. Munoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good
2016	J	`jnl`	A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Database J. Biol. Databases Curation Tong Shu Li, Àlex Bravo, Laura I. Furlong, Benjamin M. Good, Andrew I. Su
2016	J	`jnl`	BioGPS: building your own mash-up of gene annotations and expression profiles. Nucleic Acids Res. Chunlei Wu, Xuefeng Jin, Ginger Tsueng, Cyrus Afrasiabi, Andrew I. Su
2016	J	`jnl`	Branch: an interactive, web-based tool for testing hypotheses and developing predictive models. Bioinform. Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good
2016	J	`jnl`	Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Database J. Biol. Databases Curation Tim E. Putman, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Chunlei Wu, Andrew I. Su, Benjamin M. Good
2016	J	`jnl`	Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Database J. Biol. Databases Curation Àlex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong
2016	J	`jnl`	Crowdsourcing in biomedicine: challenges and opportunities. Briefings Bioinform. Ritu Khare, Benjamin M. Good, Robert Leaman, Andrew I. Su, Zhiyong Lu
2016	—	`conf`	Linking Wikidata to the Rest of the Semantic Web. SWAT4LS Andra Waagmeester, Egon L. Willighagen, Núria Queralt Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good
2016	—	`conf`	Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative Benjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester
2016	—	`conf`	Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative Benjamin M. Good, Timothy Putman, Andrew I. Su, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka
2016	J	`jnl`	Wikidata as a semantic framework for the Gene Wiki initiative. Database J. Biol. Databases Curation Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su
2015	J	`jnl`	Branch: An interactive, web-based tool for testing hypotheses and developing predictive models. CoRR Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good
2015	J	`jnl`	Exposing ambiguities in a relation-extraction gold standard with crowdsourcing. CoRR Tong Shu Li, Benjamin M. Good, Andrew I. Su
2015	Misc	`conf`	Microtask Crowdsourcing for Disease Mention Annotation in PubMed Abstracts. Pacific Symposium on Biocomputing Benjamin M. Good, Max Nanis, Chunlei Wu, Andrew I. Su
2015	J	`jnl`	Omics Pipe: a community-based framework for reproducible multi-omics data analysis. Bioinform. Kathleen M. Fisch, Tobias Meißner, Louis Gioia, Jean-Christophe Ducom, Tristan M. Carland, Salvatore Loguercio, Andrew I. Su
2015	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Robert Leaman, Benjamin M. Good, Andrew I. Su, Zhiyong Lu
2015	—	`conf`	Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond. SWAT4LS Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good
2014	J	`jnl`	Microtask crowdsourcing for disease mention annotation in PubMed abstracts. CoRR Benjamin M. Good, Max Nanis, Andrew I. Su
2013	J	`jnl`	A task-based approach for Gene Ontology evaluation. J. Biomed. Semant. Erik L. Clarke, Salvatore Loguercio, Benjamin M. Good, Andrew I. Su
2013	J	`jnl`	BioGPS and MyGene.info: organizing online, gene-centric information. Nucleic Acids Res. Chunlei Wu, Ian MacLeod, Andrew I. Su
2013	J	`jnl`	Crowdsourcing for Bioinformatics CoRR Benjamin M. Good, Andrew I. Su
2013	J	`jnl`	Crowdsourcing for bioinformatics. Bioinform. Benjamin M. Good, Andrew I. Su
2013	J	`jnl`	Ten Simple Rules for Cultivating Open Science and Collaborative R&D. PLoS Comput. Biol. Hassan Masum, Aarthi Rao, Benjamin M. Good, Matthew H. Todd, Aled M. Edwards, Leslie Chan, Barry A. Bunin, Andrew I. Su, Zakir Thomas, Philip E. Bourne
2012	—	`conf`	A Task-Based Approach for Large-Scale Evaluation of the Gene Ontology. HISB Salvatore Loguercio, Erik L. Clarke, Benjamin M. Good, Andrew I. Su
2012	J	`jnl`	Building a biomedical semantic network in Wikipedia with Semantic Wiki Links. Database J. Biol. Databases Curation Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
2012	J	`jnl`	Linking genes to diseases with a SNPedia-Gene Wiki mashup. J. Biomed. Semant. Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
2012	J	`jnl`	The Gene Wiki in 2011: community intelligence applied to human gene annotation. Nucleic Acids Res. Benjamin M. Good, Erik L. Clarke, Luca de Alfaro, Andrew I. Su
2012	—	`conf`	genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games. HISB Benjamin M. Good, Salvatore Loguercio, Max Nanis, Andrew I. Su
2011	J	`jnl`	TCLUST: A Fast Method for Clustering Genome-Scale Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. Banu Dost, Chunlei Wu, Andrew I. Su, Vineet Bafna
2010	J	`jnl`	A novel approach to investigate tissue-specific trinucleotide repeat instability. BMC Syst. Biol. Jong-Min Lee, Jie Zhang, Andrew I. Su, John R. Walker, Tim Wiltshire, Kihwa Kang, Ella Dragileva, Tammy Gillis, Edith T. Lopez, Marie-Josee Boily, Michel Cyr, Isaac S. Kohane, James F. Gusella, Marcy E. MacDonald, Vanessa C. Wheeler
2010	J	`jnl`	The Gene Wiki: community intelligence applied to human gene annotation. Nucleic Acids Res. Jon W. Huss III, Pierre Lindenbaum, Michael Martone, Donabel Roberts, Angel D. Pizarro, Faramarz Valafar, John B. Hogenesch, Andrew I. Su
2006	J	`jnl`	Comparative analysis of haplotype association mapping algorithms. BMC Bioinform. Phillip McClurg, Mathew T. Pletcher, Tim Wiltshire, Andrew I. Su