Andrew Hoopes

25 papers A* 1B 1Journal 19Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
AtlasMorph: Learning conditional deformable templates for brain MRI.
Medical Image Anal.
Marianne Rakic, Andrew Hoopes, S. Mazdak Abulnaga, Mert R. Sabuncu, John V. Guttag, Adrian V. Dalca
2025 J jnl
AtlasMorph: Learning conditional deformable templates for brain MRI.
CoRR
Marianne Rakic, Andrew Hoopes, S. Mazdak Abulnaga, Mert R. Sabuncu, John V. Guttag, Adrian V. Dalca
2025 — conf
End-to-End Cortical Surface Reconstruction from Clinical Magnetic Resonance Images.
MLMI@MICCAI
Jesper Duemose Nielsen, Karthik Gopinath, Andrew Hoopes, Adrian V. Dalca, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Axel Thielscher, Juan Eugenio Iglesias, Oula Puonti
2025 J jnl
End-to-end Cortical Surface Reconstruction from Clinical Magnetic Resonance Images.
CoRR
Jesper Duemose Nielsen, Karthik Gopinath, Andrew Hoopes, Adrian V. Dalca, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Axel Thielscher, Juan Eugenio Iglesias, Oula Puonti
2025 A* conf
MultiMorph: On-demand Atlas Construction.
CVPR
S. Mazdak Abulnaga, Andrew Hoopes, Neel Dey, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca
2025 J jnl
MultiMorph: On-demand Atlas Construction.
CoRR
S. Mazdak Abulnaga, Andrew Hoopes, Neel Dey, Malte Hoffmann, Marianne Rakic, Bruce Fischl, John V. Guttag, Adrian V. Dalca
2025 J jnl
Unified Brain Surface and Volume Registration.
CoRR
S. Mazdak Abulnaga, Andrew Hoopes, Malte Hoffmann, Robin Magnet, Maks Ovsjanikov, Lilla Zöllei, John V. Guttag, Bruce Fischl, Adrian V. Dalca
2024 J jnl
VoxelPrompt: A Vision-Language Agent for Grounded Medical Image Analysis.
CoRR
Andrew Hoopes, Victor Ion Butoi, John V. Guttag, Adrian V. Dalca
2023 J jnl
Anatomy-aware and acquisition-agnostic joint registration with SynthMorph.
CoRR
Malte Hoffmann, Andrew Hoopes, Douglas N. Greve, Bruce Fischl, Adrian V. Dalca
2023 B conf
Anatomy-specific acquisition-agnostic affine registration learned from fictitious images.
Image Processing
Malte Hoffmann, Andrew Hoopes, Bruce Fischl, Adrian V. Dalca
2023 J jnl
Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning.
IEEE Trans. Medical Imaging
Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Pew-Thian Yap, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Jens Sjölund, Daniel Grzech, Huaqi Qiu, Zeju Li, Alexander Thorley, Jinming Duan, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Nikolas Lessmann, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich
2022 J jnl
An Open-Source Tool for Longitudinal Whole-Brain and White Matter Lesion Segmentation.
CoRR
Stefano Cerri, Douglas N. Greve, Andrew Hoopes, Henrik Lundell, Hartwig R. Siebner, Mark Mühlau, Koen Van Leemput
2022 J jnl
Learning the Effect of Registration Hyperparameters with HyperMorph.
CoRR
Andrew Hoopes, Malte Hoffmann, Douglas N. Greve, Bruce Fischl, John V. Guttag, Adrian V. Dalca
2022 J jnl
SynthStrip: Skull-Stripping for Any Brain Image.
CoRR
Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann
2022 J jnl
SynthStrip: skull-stripping for any brain image.
NeuroImage
Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann
2022 — conf
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces.
MIDL
Andrew Hoopes, Juan Eugenio Iglesias, Bruce Fischl, Douglas N. Greve, Adrian V. Dalca
2021 J jnl
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images.
NeuroImage
Douglas N. Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Bruce Fischl, Juan Eugenio Iglesias, Jean C. Augustinack
2021 — conf
HyperMorph: Amortized Hyperparameter Learning for Image Registration.
IPMI
Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca
2021 J jnl
HyperMorph: Amortized Hyperparameter Learning for Image Registration.
CoRR
Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John V. Guttag, Adrian V. Dalca
2021 J jnl
Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels.
CoRR
Sungmin Hong, Anna K. Bonkhoff, Andrew Hoopes, Martin Bretzner, Markus D. Schirmer, Anne-Katrin Giese, Adrian V. Dalca, Polina Golland, Natalia S. Rost
2021 J jnl
Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning.
CoRR
Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Huaqi Qiu, Zeju Li, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich
2020 — conf
A Longitudinal Method for Simultaneous Whole-Brain and Lesion Segmentation in Multiple Sclerosis.
MLCN/RNO-AI@MICCAI
Stefano Cerri, Andrew Hoopes, Douglas N. Greve, Mark Mühlau, Koen Van Leemput
2020 J jnl
A Longitudinal Method for Simultaneous Whole-Brain and Lesion Segmentation in Multiple Sclerosis.
CoRR
Stefano Cerri, Andrew Hoopes, Douglas N. Greve, Mark Mühlau, Koen Van Leemput
2019 J jnl
PSACNN: Pulse Sequence Adaptive Fast Whole Brain Segmentation.
CoRR
Amod Jog, Andrew Hoopes, Douglas N. Greve, Koen Van Leemput, Bruce Fischl
2019 J jnl
PSACNN: Pulse sequence adaptive fast whole brain segmentation.
NeuroImage
Amod Jog, Andrew Hoopes, Douglas N. Greve, Koen Van Leemput, Bruce Fischl