Andrew E. Teschendorff

33 papers B 3Journal 29Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
FastQTLmapping: an ultra-fast and memory efficient package for mQTL-like analysis.
BMC Bioinform.
Xingjian Gao, Jiarui Li, Xinxuan Liu, Qianqian Peng, Han Jing, Sibte Hadi, Andrew E. Teschendorff, Sijia Wang, Fan Liu
2022 J jnl
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms.
Genom. Proteom. Bioinform.
Feng Xu, Yifan Wang, Yunchao Ling, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yi Zhao, Haitao Zhao, Yungang He, Guoqing Zhang, Zhen Yang
2021 J jnl
Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data.
Bioinform.
Andrew E. Teschendorff, Alok K. Maity, Xue Hu, Weiyan Chen, Matthias Lechner
2020 J jnl
EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI.
Bioinform.
Shijie C. Zheng, Charles E. Breeze, Stephan Beck, Danyue Dong, Tianyu Zhu, Liang-Xiao Ma, Wei Ye, Guoqing Zhang, Andrew E. Teschendorff
2020 J jnl
Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures.
Briefings Bioinform.
Jifan Shi, Andrew E. Teschendorff, Weiyan Chen, Luonan Chen, Tiejun Li
2019 J jnl
Accounting for differential variability in detecting differentially methylated regions.
Briefings Bioinform.
Ya Wang, Andrew E. Teschendorff, Martin Widschwendter, Shuang Wang
2019 J jnl
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.
Bioinform.
Charles E. Breeze, Alex P. Reynolds, Jenny van Dongen, Ian Dunham, John Lazar, Shane J. Neph, Jeff Vierstra, Guillaume Bourque, Andrew E. Teschendorff, John A. Stamatoyannopoulos, Stephan Beck
2019 J jnl
ebGSEA: an improved Gene Set Enrichment Analysis method for Epigenome-Wide-Association Studies.
Bioinform.
Danyue Dong, Yuan Tian, Shijie C. Zheng, Andrew E. Teschendorff
2018 J jnl
Tumor origin detection with tissue-specific miRNA and DNA methylation markers.
Bioinform.
Wei Tang, Shixiang Wan, Zhen Yang, Andrew E. Teschendorff, Quan Zou
2017 J jnl
A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
BMC Bioinform.
Andrew E. Teschendorff, Charles E. Breeze, Shijie C. Zheng, Stephan Beck
2017 J jnl
ChAMP: updated methylation analysis pipeline for Illumina BeadChips.
Bioinform.
Yuan Tian, Tiffany J. Morris, Amy P. Webster, Zhen Yang, Stephan Beck, Andrew Feber, Andrew E. Teschendorff
2017 J jnl
dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers.
Nucleic Acids Res.
Zhen Yang, Liangcai Wu, Anqiang Wang, Wei Tang, Yi Zhao, Haitao Zhao, Andrew E. Teschendorff
2016 B conf
Spatiotemporal ICA improves the selection of differentially expressed genes.
ESANN
Emilie Renard, Andrew E. Teschendorff, Pierre-Antoine Absil
2016 J jnl
Stochastic epigenetic outliers can define field defects in cancer.
BMC Bioinform.
Andrew E. Teschendorff, Allison Jones, Martin Widschwendter
2015 J jnl
Intra-Tumour Signalling Entropy Determines Clinical Outcome in Breast and Lung Cancer.
PLoS Comput. Biol.
Christopher R. S. Banerji, Simone Severini, Carlos Caldas, Andrew E. Teschendorff
2015 J jnl
Variational Bayesian Matrix Factorization for Bounded Support Data.
IEEE Trans. Pattern Anal. Mach. Intell.
Zhanyu Ma, Andrew E. Teschendorff, Arne Leijon, Yuanyuan Qiao, Honggang Zhang, Jun Guo
2014 J jnl
A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control.
Bioinform.
Yinming Jiao, Martin Widschwendter, Andrew E. Teschendorff
2014 B conf
Capturing confounding sources of variation in DNA methylation data by spatiotemporal independent component analysis.
ESANN
Emilie Renard, Andrew E. Teschendorff, Pierre-Antoine Absil
2014 J jnl
ChAMP: 450k Chip Analysis Methylation Pipeline.
Bioinform.
Tiffany J. Morris, Lee M. Butcher, Andrew Feber, Andrew E. Teschendorff, Ankur R. Chakravarthy, Tomasz K. Wojdacz, Stephan Beck
2014 J jnl
Data integration in the era of omics: current and future challenges.
BMC Syst. Biol.
David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam-Rudloff, Ana Conesa, Jesper Tegnér
2014 J jnl
The Dynamics of DNA Methylation Covariation Patterns in Carcinogenesis.
PLoS Comput. Biol.
Andrew E. Teschendorff, Xiaoping Liu, Helena Carén, Steve M. Pollard, Stephan Beck, Martin Widschwendter, Luonan Chen
2013 J jnl
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.
Bioinform.
Andrew E. Teschendorff, Francesco Marabita, Matthias Lechner, Thomas E. Bartlett, Jesper Tegnér, David Gomez-Cabrero, Stephan Beck
2013 J jnl
A variational Bayes beta Mixture Model for Feature Selection in DNA methylation Studies.
J. Bioinform. Comput. Biol.
Zhanyu Ma, Andrew E. Teschendorff
2012 J jnl
A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform.
BMC Bioinform.
Joanna Zhuang, Martin Widschwendter, Andrew E. Teschendorff
2012 J jnl
Differential variability improves the identification of cancer risk markers in DNA methylation studies profiling precursor cancer lesions.
Bioinform.
Andrew E. Teschendorff, Martin Widschwendter
2011 J jnl
DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference.
BMC Bioinform.
Yan Jiao, Katherine Lawler, Gargi S. Patel, Arnie Purushotham, Annete F. Jones, Anita Grigoriadis, Andrew Tutt, Tony C. Ng, Andrew E. Teschendorff
2011 J jnl
Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies.
Bioinform.
Andrew E. Teschendorff, Joanna Zhuang, Martin Widschwendter
2010 J jnl
Increased entropy of signal transduction in the cancer metastasis phenotype.
BMC Syst. Biol.
Andrew E. Teschendorff, Simone Severini
2009 B conf
Gene expression data analysis using spatiotemporal blind source separation.
ESANN
Matthieu Sainlez, Pierre-Antoine Absil, Andrew E. Teschendorff
2007 J jnl
Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis.
PLoS Comput. Biol.
Andrew E. Teschendorff, Michel Journée, Pierre-Antoine Absil, Rodolphe Sepulchre, Carlos Caldas
2007 — conf
Geometric Optimization Methods for Independent Component Analysis Applied on Gene Expression Data.
ICASSP (4)
Michel Journée, Andrew E. Teschendorff, Pierre-Antoine Absil, Rodolphe Sepulchre
2006 J jnl
PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancer.
Bioinform.
Andrew E. Teschendorff, Ali Naderi, Nuno L. Barbosa-Morais, Carlos Caldas
2005 J jnl
A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data.
Bioinform.
Andrew E. Teschendorff, Yanzhong Wang, Nuno L. Barbosa-Morais, James D. Brenton, Carlos Caldas