Andrew E. Jaffe

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2023 J jnl
BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data.
BMC Bioinform.
Nicholas J. Eagles, Richard Wilton, Andrew E. Jaffe, Leonardo Collado-Torres
2021 J jnl
Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses.
BMC Bioinform.
Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres
2021 J jnl
Predicting Mood Disorder Symptoms with Remotely Collected Videos Using an Interpretable Multimodal Dynamic Attention Fusion Network.
CoRR
Tathagata Banerjee, Matthew Kollada, Pablo Gersberg, Oscar Rodriguez, Jane Tiller, Andrew E. Jaffe, John Reynders
2021 J jnl
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses.
BMC Bioinform.
Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres
2018 J jnl
A Bayesian framework for multiple trait colocalization from summary association statistics.
Bioinform.
Claudia Giambartolomei, Jimmy Zhenli Liu, Wen Zhang, Mads Hauberg, Huwenbo Shi, James Boocock, Joe Pickrell, Andrew E. Jaffe, CommonMind Consortium, Bogdan Pasaniuc, Panos Roussos
2017 J jnl
Rail-RNA: scalable analysis of RNA-seq splicing and coverage.
Bioinform.
Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead
2016 J jnl
Erratum to: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.
BMC Bioinform.
Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel R. Weinberger, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni
2015 J jnl
Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.
BMC Bioinform.
Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel Weinbergern, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni
2015 J jnl
regionReport: Interactive reports for region-based analyses.
F1000Research
Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek
2014 J jnl
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Bioinform.
Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry
2013 J jnl
Gene set bagging for estimating the probability a statistically significant result will replicate.
BMC Bioinform.
Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek
2012 J jnl
The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Bioinform.
Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Andrew E. Jaffe, John D. Storey