Andrew D. Smith

33 papers B 2Journal 30Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
Strengths-weaknesses-opportunities-threats analysis of artificial intelligence in anesthesiology and perioperative medicine.
Frontiers Digit. Health
Henry J. Paiste, Ryan Godwin, Andrew D. Smith, Dan E. Berkowitz, Ryan L. Melvin
2023 J jnl
Counting Distinguishable RNA Secondary Structures.
J. Comput. Biol.
Masaru Nakajima, Andrew D. Smith
2023 J jnl
Pulmonary Surface Irregularity Score as a New Quantitative CT Marker for Idiopathic Pulmonary Fibrosis - a Pilot Study.
J. Digit. Imaging
Asser M. Abou Elkassem, Rafah Mresh, Ahmed Farag, Steven Rothenberg, Seth T. Lirette, Andrew D. Smith, Tejaswini Kulkarni
2022 J jnl
Artificial Intelligence in Perioperative Medicine: A Proposed Common Language With Applications to FDA-Approved Devices.
Frontiers Digit. Health
Ryan L. Melvin, Matthew G. Broyles, Elizabeth W. Duggan, Sonia John, Andrew D. Smith, Dan E. Berkowitz
2022 J jnl
On attainability of Kendall's tau matrices and concordance signatures.
J. Multivar. Anal.
Alexander J. McNeil, Johanna Neslehová, Andrew D. Smith
2020 J jnl
Accurate detection of short and long active ORFs using Ribo-seq data.
Bioinform.
Saket Choudhary, Wenzheng Li, Andrew D. Smith
2020 J jnl
Predicting the Number of Bases to Attain Sufficient Coverage in High-Throughput Sequencing Experiments.
J. Comput. Biol.
Chao Deng, Timothy Daley, Peter Calabrese, Jie Ren, Andrew D. Smith
2018 J jnl
A tool to visualize and analyze perfusion data: Development and application of the R package "CTP".
Comput. Methods Programs Biomed.
Seth T. Lirette, Andrew D. Smith, Inmaculada B. Aban
2017 J jnl
Riborex: fast and flexible identification of differential translation from Ribo-seq data.
Bioinform.
Wenzheng Li, Weili Wang, Philip J. Uren, Luiz O. F. Penalva, Andrew D. Smith
2016 J jnl
WALT: fast and accurate read mapping for bisulfite sequencing.
Bioinform.
Haifeng Chen, Andrew D. Smith, Ting Chen
2015 J jnl
Applications of species accumulation curves in large-scale biological data analysis.
Quant. Biol.
Chao Deng, Timothy Daley, Andrew D. Smith
2014 J jnl
Modeling genome coverage in single-cell sequencing.
Bioinform.
Timothy Daley, Andrew D. Smith
2014 J jnl
The Amordad database engine for metagenomics.
Bioinform.
Ehsan Behnam, Andrew D. Smith
2014 J jnl
Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments.
BMC Bioinform.
Egor Dolzhenko, Andrew D. Smith
2013 J jnl
A Geometric Interpretation for Local Alignment-Free Sequence Comparison.
J. Comput. Biol.
Ehsan Behnam, Michael S. Waterman, Andrew D. Smith
2013 J jnl
MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation.
Bioinform.
Jianghan Qu, Meng Zhou, Qiang Song, Elizabeth E. Hong, Andrew D. Smith
2012 J jnl
Site identification in high-throughput RNA-protein interaction data.
Bioinform.
Philip J. Uren, Emad Bahrami Samani, Suzanne C. Burns, Mei Qiao, Fedor V. Karginov, Emily Hodges, Gregory J. Hannon, Jeremy R. Sanford, Luiz O. F. Penalva, Andrew D. Smith
2011 J jnl
Identifying dispersed epigenomic domains from ChIP-Seq data.
Bioinform.
Qiang Song, Andrew D. Smith
2011 J jnl
Multiple Sequence Assembly from Reads Alignable to a Common Reference Genome.
IEEE ACM Trans. Comput. Biol. Bioinform.
Qian Peng, Andrew D. Smith
2009 J jnl
Challenges in Understanding Genome-Wide DNA Methylation.
J. Comput. Sci. Technol.
Michael Q. Zhang, Andrew D. Smith
2009 J jnl
Gene set-based module discovery in the breast cancer transcriptome.
BMC Bioinform.
Atsushi Niida, Andrew D. Smith, Seiya Imoto, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama
2009 J jnl
Updates to the RMAP short-read mapping software.
Bioinform.
Andrew D. Smith, Wen-Yu Chung, Emily Hodges, Jude Kendall, Gregory J. Hannon, James Hicks, Zhenyu Xuan, Michael Q. Zhang
2008 J jnl
Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells.
BMC Bioinform.
Atsushi Niida, Andrew D. Smith, Seiya Imoto, Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama
2008 J jnl
Using quality scores and longer reads improves accuracy of Solexa read mapping.
BMC Bioinform.
Andrew D. Smith, Zhenyu Xuan, Michael Q. Zhang
2007 J jnl
Computational prediction of novel components of lung transcriptional networks.
Bioinform.
M. Juanita Martinez, Andrew D. Smith, Bilan Li, Michael Q. Zhang, Kevin S. Harrod
2007 J jnl
Statistical significance of cis-regulatory modules.
BMC Bioinform.
Dustin E. Schones, Andrew D. Smith, Michael Q. Zhang
2005 J jnl
DWE: Discriminating Word Enumerator.
Bioinform.
Pavel Sumazin, Gengxin Chen, Naoya Hata, Andrew D. Smith, Theresa Zhang, Michael Q. Zhang
2005 — conf
Mining ChIP-chip data for transcription factor and cofactor binding sites.
ISMB (Supplement of Bioinformatics)
Andrew D. Smith, Pavel Sumazin, Debopriya Das, Michael Q. Zhang
2005 J jnl
SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution.
BMC Bioinform.
Andy Pang, Andrew D. Smith, Paulo A. S. Nuin, Elisabeth R. M. Tillier
2003 J jnl
A Transition Probability Model for Amino Acid Substitutions from Blocks.
J. Comput. Biol.
Shalini Veerassamy, Andrew D. Smith, Elisabeth R. M. Tillier
2003 B conf
Complexity of Approximating Closest Substring Problems.
FCT
Patricia A. Evans, Andrew D. Smith
2003 J jnl
On the complexity of finding common approximate substrings.
Theor. Comput. Sci.
Patricia A. Evans, Andrew D. Smith, Harold T. Wareham
2003 B conf
Toward Optimal Motif Enumeration.
WADS
Patricia A. Evans, Andrew D. Smith