Andreas Keller

67 papers A* 1B 1Journal 58Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
Benchmarking large language models for pathogen-disease classification in post-acute infection syndromes.
Briefings Bioinform.
Syed Mohammed Khalid, Tom Wölker, Leidy-Alejandra G. Molano, Simon Graf, Andreas Keller
2026 J jnl
DicePlot: a package for high-dimensional categorical data visualization.
Bioinform.
Matthias Flotho, Philipp Flotho, Andreas Keller
2025 J jnl
Site-Level Fine-Tuning with Progressive Layer Freezing: Towards Robust Prediction of Bronchopulmonary Dysplasia from Day-1 Chest Radiographs in Extremely Preterm Infants.
CoRR
Sybelle Goedicke-Fritz, Michelle Bous, Annika Engel, Matthias Flotho, Pascal Hirsch, Hannah Wittig, Dino Milanovic, Dominik Mohr, Mathias Kaspar, Sogand Nemat, Dorothea Kerner, Arno Bücker, Andreas Keller, Sascha Meyer, Michael Zemlin, Philipp Flotho
2024 — conf
Evaluating the Feasibility of Using Augmented Reality for Tooth Preparation.
VR Workshops
Takuya Kihara, Andreas Keller, Takumi Ogawa, Mehran Armand, Alejandro Martin-Gomez
2023 — conf
Feasibility Study of Using Augmented Mirrors for Alignment Task during Orthopaedic Procedures in Mixed Reality.
ISMAR-Adjunct
Xiaorui Zhang, Andreas Keller, Mehran Armand, Alejandro Martin-Gomez
2023 J jnl
isomiRdb: microRNA expression at isoform resolution.
Nucleic Acids Res.
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges Pierre Schmartz, Tobias Fehlmann, Verena Keller, Annika Engel, Fabian Kern, Michael Hackenberg, Andreas Keller
2023 J jnl
miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations.
Nucleic Acids Res.
Ernesto Aparicio-Puerta, Pascal Hirsch, Georges Pierre Schmartz, Fabian Kern, Tobias Fehlmann, Andreas Keller
2022 J jnl
BusyBee Web: towards comprehensive and differential composition-based metagenomic binning.
Nucleic Acids Res.
Georges Pierre Schmartz, Pascal Hirsch, Jérémy Amand, Jan Dastbaz, Tobias Fehlmann, Fabian Kern, Rolf Müller, Andreas Keller
2022 J jnl
Effects of Resistant Starch on Symptoms, Fecal Markers, and Gut Microbiota in Parkinson's Disease - The RESISTA-PD Trial.
Genom. Proteom. Bioinform.
Anouck Becker, Georges Pierre Schmartz, Laura Gröger, Nadja Liddy Grammes, Valentina Galata, Hannah Philippeit, Jacqueline Weiland, Nicole Ludwig, Eckart Meese, Sascha Tierling, Jörn Walter, Andreas Schwiertz, Jörg Spiegel, Gudrun Wagenpfeil, Klaus Faßbender, Andreas Keller, Marcus M. Unger
2022 J jnl
PLSDB: advancing a comprehensive database of bacterial plasmids.
Nucleic Acids Res.
Georges Pierre Schmartz, Anna Hartung, Pascal Hirsch, Fabian Kern, Tobias Fehlmann, Rolf Müller, Andreas Keller
2022 J jnl
Systematic Cross-biospecimen Evaluation of DNA Extraction Kits for Long- and Short-read Multi-metagenomic Sequencing Studies.
Genom. Proteom. Bioinform.
Jacqueline Rehner, Georges Pierre Schmartz, Laura Groeger, Jan Dastbaz, Nicole Ludwig, Matthias Hannig, Stefan Rupf, Berthold Seitz, Elias Flockerzi, Tim Berger, Matthias Christian Reichert, Marcin Krawczyk, Eckart Meese, Christian Herr, Robert Bals, Sören L. Becker, Andreas Keller, Rolf Müller
2022 J jnl
The Impact of Focus and Context Visualization Techniques on Depth Perception in Optical See-Through Head-Mounted Displays.
IEEE Trans. Vis. Comput. Graph.
Alejandro Martin-Gomez, Jakob Weiss, Andreas Keller, Ulrich Eck, Daniel Roth, Nassir Navab
2022 J jnl
miRNATissueAtlas2: an update to the human miRNA tissue atlas.
Nucleic Acids Res.
Andreas Keller, Laura Gröger, Thomas Tschernig, Jeffrey Solomon, Omar Laham, Nicholas Schaum, Viktoria Wagner, Fabian Kern, Georges Pierre Schmartz, Yongping Li, Adam Borcherding, Carola Meier, Tony Wyss-Coray, Eckart Meese, Tobias Fehlmann, Nicole Ludwig
2022 J jnl
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.
Nucleic Acids Res.
Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg
2021 J jnl
Aviator: a web service for monitoring the availability of web services.
Nucleic Acids Res.
Tobias Fehlmann, Fabian Kern, Pascal Hirsch, Robin Steinhaus, Dominik Seelow, Andreas Keller
2021 J jnl
Encyclopedia of tools for the analysis of miRNA isoforms.
Briefings Bioinform.
Georges Pierre Schmartz, Fabian Kern, Tobias Fehlmann, Viktoria Wagner, Bastian Fromm, Andreas Keller
2021 — conf
Real-time Mixed Reality Teleconsultation for Intensive Care Units in Pandemic Situations.
VR Workshops
Daniel Roth, Kevin Yu, Frieder Pankratz, Gleb Gorbachev, Andreas Keller, Marc Lazarovici, Dirk Wilhelm, Simon Weidert, Nassir Navab, Ulrich Eck
2021 J jnl
miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale.
Nucleic Acids Res.
Tobias Fehlmann, Fabian Kern, Omar Laham, Christina Backes, Jeffrey Solomon, Pascal Hirsch, Carsten Volz, Rolf Müller, Andreas Keller
2021 J jnl
miRTargetLink 2.0 - interactive miRNA target gene and target pathway networks.
Nucleic Acids Res.
Fabian Kern, Ernesto Aparicio-Puerta, Yongping Li, Tobias Fehlmann, Tim Kehl, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
2020 J jnl
GeneTrail 3: advanced high-throughput enrichment analysis.
Nucleic Acids Res.
Nico Gerstner, Tim Kehl, Kerstin Lenhof, Anne Müller, Carolin Mayer, Lea Eckhart, Nadja Liddy Grammes, Caroline Diener, Martin Hart, Oliver Hahn, Jörn Walter, Tony Wyss-Coray, Eckart Meese, Andreas Keller, Hans-Peter Lenhof
2020 J jnl
What's the target: understanding two decades of in silico microRNA-target prediction.
Briefings Bioinform.
Fabian Kern, Christina Backes, Pascal Hirsch, Tobias Fehlmann, Martin Hart, Eckart Meese, Andreas Keller
2020 J jnl
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.
Nucleic Acids Res.
Fabian Kern, Tobias Fehlmann, Jeffrey Solomon, Louisa Schwed, Nadja Liddy Grammes, Christina Backes, Kendall Van Keuren-Jensen, David W. Craig, Eckart Meese, Andreas Keller
2020 J jnl
miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database.
Nucleic Acids Res.
Tim Kehl, Fabian Kern, Christina Backes, Tobias Fehlmann, Daniel Stöckel, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
2020 J jnl
miRSwitch: detecting microRNA arm shift and switch events.
Nucleic Acids Res.
Fabian Kern, Jérémy Amand, Ilya Senatorov, Alina Isakova, Christina Backes, Eckart Meese, Andreas Keller, Tobias Fehlmann
2019 J jnl
A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sites.
Briefings Bioinform.
Tobias Fehlmann, Shashwat Sahay, Andreas Keller, Christina Backes
2019 J jnl
Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates.
Briefings Bioinform.
Cedric Christian Laczny, Valentina Galata, Achim Plum, Andreas E. Posch, Andreas Keller
2019 J jnl
ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification.
Bioinform.
Lara Schneider, Tim Kehl, Kristina Thedinga, Nadja Liddy Grammes, Christina Backes, Christopher Mohr, Benjamin Schubert, Kerstin Lenhof, Nico Gerstner, Andreas Daniel Hartkopf, Markus Wallwiener, Oliver Kohlbacher, Andreas Keller, Eckart Meese, Norbert M. Graf, Hans-Peter Lenhof
2019 J jnl
DynaVenn: web-based computation of the most significant overlap between ordered sets.
BMC Bioinform.
Jérémy Amand, Tobias Fehlmann, Christina Backes, Andreas Keller
2019 J jnl
Integrating Culture-based Antibiotic Resistance Profiles with Whole-genome Sequencing Data for 11, 087 Clinical Isolates.
Genom. Proteom. Bioinform.
Valentina Galata, Cedric Christian Laczny, Christina Backes, Georg Hemmrich-Stanisak, Susanne Schmolke, Andre Franke, Eckart Meese, Mathias Herrmann, Lutz von Müller, Achim Plum, Rolf Müller, Cord Stähler, Andreas E. Posch, Andreas Keller
2019 J jnl
Machine Learning to Detect Alzheimer's Disease from Circulating Non-coding RNAs.
Genom. Proteom. Bioinform.
Nicole Ludwig, Tobias Fehlmann, Fabian Kern, Manfred Gogol, Walter Maetzler, Stephanie Deutscher, Simone Gurlit, Claudia Schulte, Anna-Katharina von Thaler, Christian Deuschle, Florian G. Metzger, Daniela Berg, Ulrike Suenkel, Verena Keller, Christina Backes, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
2019 J jnl
PLSDB: a resource of complete bacterial plasmids.
Nucleic Acids Res.
Valentina Galata, Tobias Fehlmann, Christina Backes, Andreas Keller
2018 J jnl
A high-resolution map of the human small non-coding transcriptome.
Bioinform.
Tobias Fehlmann, Christina Backes, Julia Alles, Ulrike Fischer, Martin Hart, Fabian Kern, Hilde Langseth, Trine Rounge, Sinan Ugur Umu, Mustafa Kahraman, Thomas Laufer, Jan Haas, Cord Staehler, Nicole Ludwig, Matthias Hübenthal, Benjamin Meder, Andre Franke, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
2018 J jnl
Comparing genome versus proteome-based identification of clinical bacterial isolates.
Briefings Bioinform.
Valentina Galata, Christina Backes, Cedric Christian Laczny, Georg Hemmrich-Stanisak, Howard Li, Laura Smoot, Andreas E. Posch, Susanne Schmolke, Markus Bischoff, Lutz von Müller, Achim Plum, Andre Franke, Andreas Keller
2018 J jnl
Genome-wide MicroRNA Expression Profiles in COPD: Early Predictors for Cancer Development.
Genom. Proteom. Bioinform.
Andreas Keller, Tobias Fehlmann, Nicole Ludwig, Mustafa Kahraman, Thomas Laufer, Christina Backes, Claus Vogelmeier, Caroline Diener, Frank Biertz, Christian Herr, Rudolf A. Jörres, Hans-Peter Lenhof, Eckart Meese, Robert Bals
2018 J jnl
IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA-target interactions.
Nucleic Acids Res.
Valeria Palmieri, Christina Backes, Nicole Ludwig, Tobias Fehlmann, Fabian Kern, Eckart Meese, Andreas Keller
2018 J jnl
REGGAE: a novel approach for the identification of key transcriptional regulators.
Bioinform.
Tim Kehl, Lara Schneider, Kathrin Kattler, Daniel Stöckel, Jenny Wegert, Nico Gerstner, Nicole Ludwig, Ute Distler, Markus Schick, Ulrich Keller, Stefan Tenzer, Manfred Gessler, Jörn Walter, Andreas Keller, Norbert M. Graf, Eckart Meese, Hans-Peter Lenhof
2018 J jnl
miRCarta: a central repository for collecting miRNA candidates.
Nucleic Acids Res.
Christina Backes, Tobias Fehlmann, Fabian Kern, Tim Kehl, Hans-Peter Lenhof, Eckart Meese, Andreas Keller
2017 J jnl
BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation.
Nucleic Acids Res.
Cedric Christian Laczny, Christina Kiefer, Valentina Galata, Tobias Fehlmann, Christina Backes, Andreas Keller
2017 J jnl
LitDB - Keeping Track of Research Papers From Your Institute Made Simple.
Source Code Biol. Medicine
Jörn Bethune, Lars Kraemer, Ingo Thomsen, Andreas Keller, David Ellinghaus, Andre Franke
2017 J jnl
RegulatorTrail: a web service for the identification of key transcriptional regulators.
Nucleic Acids Res.
Tim Kehl, Lara Schneider, Florian Schmidt, Daniel Stöckel, Nico Gerstner, Christina Backes, Eckart Meese, Andreas Keller, Marcel H. Schulz, Hans-Peter Lenhof
2017 J jnl
miRPathDB: a new dictionary on microRNAs and target pathways.
Nucleic Acids Res.
Christina Backes, Tim Kehl, Daniel Stöckel, Tobias Fehlmann, Lara Schneider, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
2016 J jnl
BALL-SNPgp - from genetic variants toward computational diagnostics.
Bioinform.
Sabine C. Mueller, Christina Backes, Alexander Greß, Nina Baumgarten, Olga V. Kalinina, Andreas Moll, Oliver Kohlbacher, Eckart Meese, Andreas Keller
2016 J jnl
Computational Cardiology - A New Discipline of Translational Research.
Genom. Proteom. Bioinform.
Benjamin Meder, Hugo A. Katus, Andreas Keller
2016 J jnl
EDISON-WMW: Exact Dynamic Programing Solution of the Wilcoxon-Mann-Whitney Test.
Genom. Proteom. Bioinform.
Alexander Marx, Christina Backes, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
2016 J jnl
Multi-omics enrichment analysis using the GeneTrail2 web service.
Bioinform.
Daniel Stöckel, Tim Kehl, Patrick Trampert, Lara Schneider, Christina Backes, Nicole Ludwig, Andreas Gerasch, Michael Kaufmann, Manfred Gessler, Norbert M. Graf, Eckart Meese, Andreas Keller, Hans-Peter Lenhof
2016 A* conf
Privacy in Epigenetics: Temporal Linkability of MicroRNA Expression Profiles.
USENIX Security Symposium
Michael Backes, Pascal Berrang, Anna Hecksteden, Mathias Humbert, Andreas Keller, Tim Meyer
2016 J jnl
StructMAn: annotation of single-nucleotide polymorphisms in the structural context.
Nucleic Acids Res.
Alexander Greß, Vasily Ramensky, Joachim Büch, Andreas Keller, Olga V. Kalinina
2016 J jnl
The Role of Quality Control in Targeted Next-generation Sequencing Library Preparation.
Genom. Proteom. Bioinform.
Rouven Nietsch, Jan Haas, Alan Lai, Daniel Oehler, Stefan Mester, Karen S. Frese, Farbod Sedaghat-Hamedani, Elham Kayvanpour, Andreas Keller, Benjamin Meder
2016 J jnl
miEAA: microRNA enrichment analysis and annotation.
Nucleic Acids Res.
Christina Backes, Qurratulain T. Khaleeq, Eckart Meese, Andreas Keller
2015 J jnl
Pathogenicity prediction of non-synonymous single nucleotide variants in dilated cardiomyopathy.
Briefings Bioinform.
Sabine C. Mueller, Christina Backes, Jan Haas, Hugo A. Katus, Benjamin Meder, Eckart Meese, Andreas Keller
2015 J jnl
Regulatory MicroRNA Networks: Complex Patterns of Target Pathways for Disease-related and Housekeeping MicroRNAs.
Genom. Proteom. Bioinform.
Sachli Zafari, Christina Backes, Petra Leidinger, Eckart Meese, Andreas Keller
2014 — conf
Finite Element Approximation with Hierarchical B-Splines.
Curves and Surfaces
Christian Apprich, Klaus Höllig, Jörg Hörner, Andreas Keller, Esfandiar Nava Yazdani
2013 — conf
From Medical Images to Fast Computational Models of Heart Electromechanics: An Integrated Framework towards Clinical Use.
FIMH
Oliver Zettinig, Tommaso Mansi, Bogdan Georgescu, Saikiran Rapaka, Ali Kamen, Jan Haas, Karen S. Frese, Farbod Sedaghat-Hamedani, Elham Kayvanpour, Ali Amr, Stefan Hardt, Derliz Mereles, Henning Steen, Andreas Keller, Hugo A. Katus, Benjamin Meder, Nassir Navab, Dorin Comaniciu
2013 J jnl
NetworkTrail - a web service for identifying and visualizing deregulated subnetworks.
Bioinform.
Daniel Stöckel, Oliver Müller, Tim Kehl, Andreas Gerasch, Christina Backes, Alexander Rurainski, Andreas Keller, Michael Kaufmann, Hans-Peter Lenhof
2012 J jnl
Lexicon-free handwritten word spotting using character HMMs.
Pattern Recognit. Lett.
Andreas Fischer, Andreas Keller, Volkmar Frinken, Horst Bunke
2012 J jnl
Whole miRNome-wide Differential Co-expression of MicroRNAs.
Genom. Proteom. Bioinform.
Cord F. Stähler, Andreas Keller, Petra Leidinger, Christina Backes, Anoop Chandran, Jöerg Wischhusen, Benjamin Meder, Eckart Meese
2012 J jnl
miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases.
BMC Bioinform.
Cedric Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A. Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof, Andreas Keller
2010 B conf
HMM-based Word Spotting in Handwritten Documents Using Subword Models.
ICPR
Andreas Fischer, Andreas Keller, Volkmar Frinken, Horst Bunke
2009 J jnl
A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.
Bioinform.
Andreas Keller, Christina Backes, Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof
2009 J jnl
Large-scale antibody profiling of human blood sera: The future of molecular diagnosis.
Inform. Spektrum
Andreas Keller, Nicole Ludwig, Sabrina Heisel, Petra Leidinger, Claudia Andres, Wolf-Ingo Steudel, Hanno Huwer, Bernhard Burgeth, Matthias Hein, Joachim Weickert, Eckart Meese, Hans-Peter Lenhof
2008 J jnl
GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments.
BMC Bioinform.
Andreas Keller, Christina Backes, Maher Al-Awadhi, Andreas Gerasch, Jan Küntzer, Oliver Kohlbacher, Michael Kaufmann, Hans-Peter Lenhof
2008 — —
Understanding cancer with bioinformatics.
Andreas Keller
2007 J jnl
Computation of significance scores of unweighted Gene Set Enrichment Analyses.
BMC Bioinform.
Andreas Keller, Christina Backes, Hans-Peter Lenhof
2007 J jnl
GeneTrail - advanced gene set enrichment analysis.
Nucleic Acids Res.
Christina Backes, Andreas Keller, Jan Küntzer, Benny Kneissl, Nicole Comtesse, Yasser A. Elnakady, Rolf Müller, Eckart Meese, Hans-Peter Lenhof
2007 J jnl
SePaCS - a web-based application for classification of seroreactivity profiles.
Nucleic Acids Res.
Andreas Keller, Nicole Comtesse, Nicole Ludwig, Eckart Meese, Hans-Peter Lenhof
2006 J jnl
A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors.
BMC Bioinform.
Andreas Keller, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt, Eckart Meese, Hans-Peter Lenhof
1996 — conf
Videodensitometrische und Videotopometrische Messungen in Röntgenbildern.
Bildverarbeitung für die Medizin
Andreas Keller, Thomas Baehring, H. Krause, H. Richter, V. Natchkova