Andreas Hildebrandt

56 papers A* 2A 1B 2C 4Misc 1Journal 33Unranked 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Metric Differential Privacy on the Special Orthogonal Group SO(3).
J. Cybersecur. Priv.
Anna Katharina Hildebrandt, Elmar Schömer, Andreas Hildebrandt
2023 J jnl
CUDA-accelerated protein electrostatics in linear space.
J. Comput. Sci.
Thomas Kemmer, Sebastian Hack, Bertil Schmidt, Andreas Hildebrandt
2023 J jnl
Ionmob: a Python package for prediction of peptide collisional cross-section values.
Bioinform.
David Teschner, David Gomez-Zepeda, Arthur Declercq, Mateusz K. Lacki, Seymen Avci, Konstantin Bob, Ute Distler, Thomas Michna, Lennart Martens, Stefan Tenzer, Andreas Hildebrandt
2022 J jnl
Locality-sensitive hashing enables efficient and scalable signal classification in high-throughput mass spectrometry raw data.
BMC Bioinform.
Konstantin Bob, David Teschner, Thomas Kemmer, David Gomez-Zepeda, Stefan Tenzer, Bertil Schmidt, Andreas Hildebrandt
2021 J jnl
Automatic shape detection of ice crystals.
J. Comput. Sci.
Lucas Grulich, Ralf Weigel, Andreas Hildebrandt, Michael Wand, Peter Spichtinger
2021 J jnl
CARE: context-aware sequencing read error correction.
Bioinform.
Felix Kallenborn, Andreas Hildebrandt, Bertil Schmidt
2021 — conf
Learning Molecular Classes from Small Numbers of Positive Examples Using Graph Grammars.
AlCoB
Ernst Althaus, Andreas Hildebrandt, Domenico Mosca
2021 — conf
Privately Querying Privacy: Privacy Estimation with Guaranteed Privacy of User and Database Party.
ALGOCLOUD
Anna Katharina Hildebrandt, Ernst Althaus, Andreas Hildebrandt
2020 J jnl
A big data approach to metagenomics for all-food-sequencing.
BMC Bioinform.
Robin Kobus, José Manuel Abuín, André Müller, Sören Lukas Hellmann, Juan Carlos Pichel, Tomás F. Pena, Andreas Hildebrandt, Thomas Hankeln, Bertil Schmidt
2020 A conf
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation.
IPDPS
André Müller, Bertil Schmidt, Andreas Hildebrandt, Richard Membarth, Roland Leißa, Matthis Kruse, Sebastian Hack
2020 J jnl
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation.
CoRR
André Müller, Bertil Schmidt, Andreas Hildebrandt, Richard Membarth, Roland Leißa, Matthis Kruse, Sebastian Hack
2019 — ch.
Dedicated Bioinformatics Analysis Hardware.
Encyclopedia of Bioinformatics and Computational Biology (2)
Bertil Schmidt, Andreas Hildebrandt
2018 J jnl
NESSie.jl - Efficient and intuitive finite element and boundary element methods for nonlocal protein electrostatics in the Julia language.
J. Comput. Sci.
Thomas Kemmer, Sergej Rjasanow, Andreas Hildebrandt
2017 — conf
Graph Rewriting Based Search for Molecular Structures: Definitions, Algorithms, Hardness.
STAF Workshops
Ernst Althaus, Andreas Hildebrandt, Domenico Mosca
2017 J jnl
MetaCache: context-aware classification of metagenomic reads using minhashing.
Bioinform.
André Müller, Christian Hundt, Andreas Hildebrandt, Thomas Hankeln, Bertil Schmidt
2016 J jnl
CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm.
Int. J. High Perform. Comput. Appl.
Hoang-Vu Dang, Bertil Schmidt, Andreas Hildebrandt, Tuan Tu Tran, Anna Katharina Hildebrandt
2016 J jnl
rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs.
BMC Bioinform.
Christian Hundt, Andreas Hildebrandt, Bertil Schmidt
2015 J jnl
ballaxy: web services for structural bioinformatics.
Bioinform.
Anna Katharina Hildebrandt, Daniel Stöckel, Nina M. Fischer, Luis de la Garza, Jens Krüger, Stefan Nickels, Marc Röttig, Charlotta Schärfe, Marcel Schumann, Philipp Thiel, Hans-Peter Lenhof, Oliver Kohlbacher, Andreas Hildebrandt
2014 — conf
A Greedy Algorithm for Hierarchical Complete Linkage Clustering.
AlCoB
Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt
2014 C conf
Algorithms for the Maximum Weight Connected k -Induced Subgraph Problem.
COCOA
Ernst Althaus, Markus Blumenstock, Alexej Disterhoft, Andreas Hildebrandt, Markus Krupp
2014 J jnl
Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking.
J. Chem. Inf. Model.
Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer
2014 J jnl
Efficient computation of root mean square deviations under rigid transformations.
J. Comput. Chem.
Anna Katharina Hildebrandt, Matthias Dietzen, Thomas Lengauer, Hans-Peter Lenhof, Ernst Althaus, Andreas Hildebrandt
2014 C conf
Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs.
PDP
Hoang-Vu Dang, Bertil Schmidt, Andreas Hildebrandt, Anna Katharina Hildebrandt
2014 J jnl
SKINK: a web server for string kernel based kink prediction in α-helices.
Bioinform.
Tim Seifert, Andreas Lund, Benny Kneissl, Sabine C. Mueller, Christofer S. Tautermann, Andreas Hildebrandt
2013 J jnl
CellLineNavigator: a workbench for cancer cell line analysis.
Nucleic Acids Res.
Markus Krupp, Timo Itzel, Thorsten Maass, Andreas Hildebrandt, Peter R. Galle, Andreas Teufel
2013 — conf
Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics.
GCB
Anna Katharina Hildebrandt, Ernst Althaus, Hans-Peter Lenhof, Chien-Wen Hung, Andreas Tholey, Andreas Hildebrandt
2013 J jnl
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction.
BMC Bioinform.
Anna Katharina Dehof, Simon Loew, Hans-Peter Lenhof, Andreas Hildebrandt
2013 — conf
PresentaBALL - A powerful package for presentations and lessons in structural biology.
BioVis
Stefan Nickels, Daniel Stöckel, Sabine C. Mueller, Hans-Peter Lenhof, Andreas Hildebrandt, Anna Katharina Dehof
2012 A* conf
A dynamic program analysis to find floating-point accuracy problems.
PLDI
Florian Benz, Andreas Hildebrandt, Sebastian Hack
2012 J jnl
Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching.
BMC Bioinform.
Martin Slawski, Rene Hussong, Andreas Tholey, Thomas Jakoby, Barbara Gregorius, Andreas Hildebrandt, Matthias Hein
2012 J jnl
On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking.
J. Chem. Inf. Model.
Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer
2012 C conf
ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences.
IV
Stefan Nickels, Hienke Sminia, Sabine C. Mueller, Bas Kools, Anna Katharina Dehof, Hans-Peter Lenhof, Andreas Hildebrandt
2011 A* conf
A fast solver for nonlocal electrostatic theory in biomolecular science and engineering.
DAC
Jaydeep P. Bardhan, Andreas Hildebrandt
2011 J jnl
Automated bond order assignment as an optimization problem.
Bioinform.
Anna Katharina Dehof, Alexander Rurainski, Quang Bao Anh Bui, Sebastian Böcker, Hans-Peter Lenhof, Andreas Hildebrandt
2011 J jnl
String Kernels and High-Quality Data Set for Improved Prediction of Kinked Helices in α-Helical Membrane Proteins.
J. Chem. Inf. Model.
Benny Kneissl, Sabine C. Mueller, Christofer S. Tautermann, Andreas Hildebrandt
2010 — conf
A Novel Three-Dimensional Collaborative Online Platform for Bio-molecular Modeling.
Smart Graphics
Kugamoorthy Gajananan, Arturo Nakasone, Andreas Hildebrandt, Helmut Prendinger
2010 J jnl
A new numerical method for nonlocal electrostatics in biomolecular simulations.
J. Comput. Phys.
Sophie Weggler, V. Rutka, Andreas Hildebrandt
2010 J jnl
BALL - biochemical algorithms library 1.3.
BMC Bioinform.
Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski, Andreas Bertsch, Marcel Schumann, Nora C. Toussaint, Andreas Moll, Daniel Stöckel, Stefan Nickels, Sabine C. Mueller, Hans-Peter Lenhof, Oliver Kohlbacher
2010 — conf
Measuring properties of molecular surfaces using ray casting.
IPDPS Workshops
Mike Phillips, Iliyan Georgiev, Anna Katharina Dehof, Stefan Nickels, Lukas Marsalek, Hans-Peter Lenhof, Andreas Hildebrandt, Philipp Slusallek
2010 C conf
Real-Time Ray Tracing of Complex Molecular Scenes.
IV
Lukas Marsalek, Anna Katharina Dehof, Iliyan Georgiev, Hans-Peter Lenhof, Philipp Slusallek, Andreas Hildebrandt
2010 — ch.
Signal Processing in Proteomics.
Proteome Bioinformatics
Rene Hussong, Andreas Hildebrandt
2009 J jnl
A consensus line search algorithm for molecular potential energy functions.
J. Comput. Chem.
Alexander Rurainski, Andreas Hildebrandt, Hans-Peter Lenhof
2009 — conf
Automated Bond Order Assignment as an Optimization Problem.
GCB
Anna Katharina Dehof, Alexander Rurainski, Hans-Peter Lenhof, Andreas Hildebrandt
2009 J jnl
Highly accelerated feature detection in proteomics data sets using modern graphics processing units.
Bioinform.
Rene Hussong, Barbara Gregorius, Andreas Tholey, Andreas Hildebrandt
2008 J jnl
Computational Quantification of Peptides from LC-MS Data.
J. Comput. Biol.
Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Leinenbach, Andreas Hildebrandt, Christian G. Huber, Knut Reinert
2008 J jnl
OpenMS - An open-source software framework for mass spectrometry.
BMC Bioinform.
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
2007 B conf
A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data.
RECOMB
Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
2007 J jnl
Electrostatic potentials of proteins in water: a structured continuum approach.
Bioinform.
Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof
2006 J jnl
A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors.
BMC Bioinform.
Andreas Keller, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt, Eckart Meese, Hans-Peter Lenhof
2006 J jnl
BALLView: a tool for research and education in molecular modeling.
Bioinform.
Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher
2006 J jnl
BN++ - A Biological Information System.
J. Integr. Bioinform.
Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
2006 Misc conf
High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques.
Pacific Symposium on Biocomputing
Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt
2005 J jnl
BALLView: An object-oriented molecular visualization and modeling framework.
J. Comput. Aided Mol. Des.
Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher
2005 — conf
Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools.
Computational Proteomics
Hansjörg Toll, Peter Berger, Andreas Hofmann, Andreas Hildebrandt, Herbert Oberacher, Hans-Peter Lenhof, Christian G. Huber
2005 — conf
High-accuracy peak picking of proteomics data.
Computational Proteomics
Eva Lange, Clemens Gröpl, Oliver Kohlbacher, Andreas Hildebrandt
2001 B conf
A NMR-spectra-based scoring function for protein docking.
RECOMB
Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof