Andreas Heger

17 papers B 1Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2019 J jnl
CGAT-core: a python framework for building scalable, reproducible computational biology workflows.
F1000Research
Adam P. Cribbs, Sebastian Luna-Valero, Charlotte George, Ian M. Sudbery, Antonio J. Berlanga-Taylor, Stephen N. Sansom, Tom Smith, Nicholas E. Ilott, Jethro S. Johnson, Jakub Scaber, Katherine Brown, David Sims, Andreas Heger
2014 J jnl
CGAT: computational genomics analysis toolkit.
Bioinform.
David Sims, Nicholas E. Ilott, Stephen N. Sansom, Ian M. Sudbery, Jethro S. Johnson, Katherine A. Fawcett, Antonio J. Berlanga-Taylor, Sebastian Luna-Valero, Chris P. Ponting, Andreas Heger
2014 J jnl
Pfam: the protein families database.
Nucleic Acids Res.
Robert D. Finn, Alex Bateman, Jody Clements, Penelope Coggill, Ruth Y. Eberhardt, Sean R. Eddy, Andreas Heger, Kirstie Hetherington, Liisa Holm, Jaina Mistry, Erik L. L. Sonnhammer, John G. Tate, Marco Punta
2013 J jnl
GAT: a simulation framework for testing the association of genomic intervals.
Bioinform.
Andreas Heger, Caleb Webber, Martin Goodson, Chris P. Ponting, Gerton Lunter
2012 J jnl
The Pfam protein families database.
Nucleic Acids Res.
Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn
2010 J jnl
The Pfam protein families database.
Nucleic Acids Res.
Robert D. Finn, Jaina Mistry, John G. Tate, Penny C. Coggill, Andreas Heger, Joanne E. Pollington, O. Luke Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman
2008 J jnl
OPTIC: orthologous and paralogous transcripts in clades.
Nucleic Acids Res.
Andreas Heger, Chris P. Ponting
2008 J jnl
PairsDB atlas of protein sequence space.
Nucleic Acids Res.
Andreas Heger, Eija Korpelainen, Taavi Hupponen, Kimmo Mattila, Vesa Ollikainen, Liisa Holm
2007 J jnl
The global trace graph, a novel paradigm for searching protein sequence databases.
Bioinform.
Andreas Heger, Swapan Mallick, Christopher Andrew Wilton, Liisa Holm
2005 J jnl
ADDA: a domain database with global coverage of the protein universe.
Nucleic Acids Res.
Andreas Heger, Christopher Andrew Wilton, Ashwin Sivakumar, Liisa Holm
2004 J jnl
Accurate Detection of Very Sparse Sequence Motifs.
J. Comput. Biol.
Andreas Heger, Michael Lappe, Liisa Holm
2003 B conf
Accurate detection of very sparse sequence motifs.
RECOMB
Andreas Heger, Michael Lappe, Liisa Holm
2003 — conf
Sensitive pattern discovery with 'fuzzy' alignments of distantly related proteins.
ISMB (Supplement of Bioinformatics)
Andreas Heger, Liisa Holm
2001 J jnl
A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3.
Nucleic Acids Res.
Sabine Dietmann, Jong-Chan Park, Cédric Notredame, Andreas Heger, Michael Lappe, Liisa Holm
2001 J jnl
Picasso: generating a covering set of protein family profiles.
Bioinform.
Andreas Heger, Liisa Holm
2000 J jnl
Estimating the significance of sequence order in protein secondary structure and prediction.
Bioinform.
Jong-Chan Park, Sabine Dietmann, Andreas Heger, Liisa Holm
2000 J jnl
RSDB: representative protein sequence databases have high information content.
Bioinform.
Jong-Chan Park, Liisa Holm, Andreas Heger, Cyrus Chothia