Andrea Bernini

12 papers A* 1Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2024 A* conf
Evading Community Detection via Counterfactual Neighborhood Search.
KDD
Andrea Bernini, Fabrizio Silvestri, Gabriele Tolomei
2023 J jnl
Community Membership Hiding as Counterfactual Graph Search via Deep Reinforcement Learning.
CoRR
Andrea Bernini, Fabrizio Silvestri, Gabriele Tolomei
2023 — conf
Contrastive Learning with 3D Shapes.
Tiny Papers @ ICLR
Andrea Bernini
2021 J jnl
Machine learning application for patient stratification and phenotype/genotype investigation in a rare disease.
Briefings Bioinform.
Ottavia Spiga, Vittoria Cicaloni, Giovanna Maria Dimitri, Francesco Pettini, Daniela Braconi, Andrea Bernini, Annalisa Santucci
2020 J jnl
AKUImg: A database of cartilage images of Alkaptonuria patients.
Comput. Biol. Medicine
Alberto Rossi, Giorgia Giacomini, Vittoria Cicaloni, Silvia Galderisi, Maria Serena Milella, Andrea Bernini, Lia Millucci, Ottavia Spiga, Monica Bianchini, Annalisa Santucci
2020 J jnl
Transient pockets as mediators of gas molecules routes inside proteins: The case study of dioxygen pathway in homogentisate 1, 2-dioxygenase and its implication in Alkaptonuria development.
Comput. Biol. Chem.
Andrea Bernini, Silvia Galderisi, Ottavia Spiga, Chukwudi Onyekachi Amarabom, Annalisa Santucci
2018 J jnl
A new integrated and interactive tool applicable to inborn errors of metabolism: Application to alkaptonuria.
Comput. Biol. Medicine
Ottavia Spiga, Vittoria Cicaloni, Andrea Zatkova, Lia Millucci, Giulia Bernardini, Andrea Bernini, Barbara Marzocchi, Monica Bianchini, Andrea Zugarini, Alberto Rossi, Matteo Zazzeri, Alfonso Trezza, Bruno Frediani, Lakshminarayan Ranganath, Daniela Braconi, Annalisa Santucci
2018 J jnl
Process calculi for biological processes.
Nat. Comput.
Andrea Bernini, Linda Brodo, Pierpaolo Degano, Moreno Falaschi, Diana Hermith
2017 J jnl
ApreciseKUre: an approach of Precision Medicine in a Rare Disease.
BMC Medical Informatics Decis. Mak.
Ottavia Spiga, Vittoria Cicaloni, Andrea Bernini, Andrea Zatkova, Annalisa Santucci
2017 J jnl
Toward a generalized computational workflow for exploiting transient pockets as new targets for small molecule stabilizers: Application to the homogentisate 1, 2-dioxygenase mutants at the base of rare disease Alkaptonuria.
Comput. Biol. Chem.
Andrea Bernini, Silvia Galderisi, Ottavia Spiga, Giulia Bernardini, Neri Niccolai, Fabrizio Manetti, Annalisa Santucci
2013 J jnl
ProCoCoA: A quantitative approach for analyzing protein core composition.
Comput. Biol. Chem.
Silvia Bottini, Andrea Bernini, Matteo De Chiara, Diego Garlaschelli, Ottavia Spiga, Marco Dioguardi, Elisa Vannuccini, Anna Tramontano, Neri Niccolai
2005 J jnl
Three-dimensional computation of atom depth in complex molecular structures.
Bioinform.
Daniele Varrazzo, Andrea Bernini, Ottavia Spiga, Arianna Ciutti, Stefano Chiellini, Vincenzo Venditti, Luisa Bracci, Neri Niccolai